Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LO014_RS01460 Genome accession   NZ_CP087300
Coordinates   293304..293630 (+) Length   108 a.a.
NCBI ID   WP_258584016.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC061     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 288304..298630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS01435 hemC 288921..289838 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  LO014_RS01440 - 289843..290610 (+) 768 WP_000897417.1 uroporphyrinogen-III synthase -
  LO014_RS01445 - 290619..291458 (+) 840 WP_001230207.1 hypothetical protein -
  LO014_RS01450 - 291468..292661 (+) 1194 WP_000681777.1 hypothetical protein -
  LO014_RS01455 - 292669..293109 (+) 441 WP_000661569.1 thioesterase family protein -
  LO014_RS01460 hns 293304..293630 (+) 327 WP_258584016.1 H-NS histone family protein Regulator
  LO014_RS01465 gspN 293962..294705 (+) 744 WP_000730343.1 type II secretion system protein N -
  LO014_RS01470 - 294705..295541 (+) 837 WP_000870031.1 type II secretion system protein N -
  LO014_RS01475 gspD 295583..297859 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  LO014_RS01480 - 297900..298529 (+) 630 WP_002058846.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12476.15 Da        Isoelectric Point: 5.0524

>NTDB_id=628438 LO014_RS01460 WP_258584016.1 293304..293630(+) (hns) [Acinetobacter baumannii strain OC061]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENLGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=628438 LO014_RS01460 WP_258584016.1 293304..293630(+) (hns) [Acinetobacter baumannii strain OC061]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATTTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991