Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   N4T40_RS03220 Genome accession   NZ_CP104335
Coordinates   599258..599773 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain 2021CK-01408     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 594258..604773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T40_RS03200 (N4T40_03200) - 594576..596036 (+) 1461 WP_000004971.1 amino acid permease -
  N4T40_RS03205 (N4T40_03205) - 596314..597519 (+) 1206 WP_000354412.1 RtcB family protein -
  N4T40_RS03210 (N4T40_03210) - 597538..597681 (+) 144 WP_162138624.1 hypothetical protein -
  N4T40_RS03215 (N4T40_03215) omp38 597806..598876 (-) 1071 WP_000777880.1 outer membrane protein Omp38 -
  N4T40_RS03220 (N4T40_03220) fimT 599258..599773 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  N4T40_RS03225 (N4T40_03225) - 599882..601057 (+) 1176 WP_000129964.1 thiolase family protein -
  N4T40_RS03230 (N4T40_03230) - 601184..601627 (+) 444 WP_001176580.1 VOC family protein -
  N4T40_RS03235 (N4T40_03235) - 601670..602023 (-) 354 WP_000457786.1 multidrug efflux SMR transporter -
  N4T40_RS03240 (N4T40_03240) - 602105..602590 (-) 486 WP_000935247.1 DUF934 domain-containing protein -
  N4T40_RS03245 (N4T40_03245) - 602583..604226 (-) 1644 WP_000281764.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=628422 N4T40_RS03220 WP_000477151.1 599258..599773(+) (fimT) [Acinetobacter baumannii strain 2021CK-01408]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=628422 N4T40_RS03220 WP_000477151.1 599258..599773(+) (fimT) [Acinetobacter baumannii strain 2021CK-01408]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGACATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427