Detailed information NTG0628405

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: N0544_RS21190
• Genome accession: NZ_CP104330
• Coordinates: 4360292..4361317 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain THB42-F3
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4355292..4366317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N0544_RS21170 (N0544_21170)	metJ	4356353..4356670 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
N0544_RS21175 (N0544_21175)	yiiX	4356854..4357462 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
N0544_RS21180 (N0544_21180)	rpmE	4357523..4357735 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
N0544_RS21185 (N0544_21185)	priA	4357938..4360136 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
N0544_RS21190 (N0544_21190)	cytR	4360292..4361317 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
N0544_RS21195 (N0544_21195)	ftsN	4361409..4362368 (+)	960	WP_000068828.1	cell division protein FtsN	-
N0544_RS21200 (N0544_21200)	hslV	4362461..4362991 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
N0544_RS21205 (N0544_21205)	hslU	4363001..4364332 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
N0544_RS21210 (N0544_21210)	menA	4364399..4365325 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
N0544_RS21215 (N0544_21215)	rraA	4365418..4365903 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
N0544_RS21220 (N0544_21220)	zapB	4365988..4366233 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=628405 N0544_RS21190 WP_000644904.1 4360292..4361317(+) (cytR) [Escherichia coli strain THB42-F3]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=628405 N0544_RS21190 WP_000644904.1 4360292..4361317(+) (cytR) [Escherichia coli strain THB42-F3]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628