Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LO009_RS01550 Genome accession   NZ_CP087298
Coordinates   327719..328045 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain OC070     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 322719..333045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS01525 hemC 323336..324253 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  LO009_RS01530 - 324258..325025 (+) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  LO009_RS01535 - 325034..325873 (+) 840 WP_138149124.1 hypothetical protein -
  LO009_RS01540 - 325883..327076 (+) 1194 WP_202733608.1 heme biosynthesis protein HemY -
  LO009_RS01545 - 327084..327524 (+) 441 WP_043960409.1 thioesterase family protein -
  LO009_RS01550 hns 327719..328045 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LO009_RS01555 gspN 328377..329120 (+) 744 WP_000730343.1 type II secretion system protein N -
  LO009_RS01560 - 329120..329956 (+) 837 WP_023897402.1 type II secretion system protein N -
  LO009_RS01565 gspD 329998..332268 (+) 2271 WP_004842719.1 type II secretion system secretin GspD -
  LO009_RS01570 - 332309..332938 (+) 630 WP_000219972.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=628397 LO009_RS01550 WP_000801427.1 327719..328045(+) (hns) [Acinetobacter baumannii strain OC070]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=628397 LO009_RS01550 WP_000801427.1 327719..328045(+) (hns) [Acinetobacter baumannii strain OC070]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1