Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LO009_RS00935 Genome accession   NZ_CP087298
Coordinates   196938..198092 (-) Length   384 a.a.
NCBI ID   WP_000755274.1    Uniprot ID   A0A837Q7Q6
Organism   Acinetobacter baumannii strain OC070     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 191938..203092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS00915 - 193099..193749 (+) 651 WP_085941237.1 TetR/AcrR family transcriptional regulator -
  LO009_RS00920 - 193855..194775 (+) 921 WP_001994180.1 DMT family transporter -
  LO009_RS00925 - 195167..195736 (-) 570 WP_000633611.1 L-threonylcarbamoyladenylate synthase -
  LO009_RS00930 dprA 195787..196917 (-) 1131 WP_002043965.1 DNA-processing protein DprA Machinery gene
  LO009_RS00935 tsaP 196938..198092 (-) 1155 WP_000755274.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LO009_RS00940 def 198215..198745 (+) 531 WP_001196539.1 peptide deformylase -
  LO009_RS00945 - 198782..199210 (+) 429 WP_000231981.1 DUF2946 family protein -
  LO009_RS00950 - 199282..201396 (+) 2115 WP_138149648.1 TonB-dependent copper receptor -
  LO009_RS00955 - 201450..201656 (+) 207 WP_000182542.1 hypothetical protein -
  LO009_RS00960 - 201726..202941 (-) 1216 Protein_184 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42387.34 Da        Isoelectric Point: 8.5841

>NTDB_id=628393 LO009_RS00935 WP_000755274.1 196938..198092(-) (tsaP) [Acinetobacter baumannii strain OC070]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTHLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
IFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=628393 LO009_RS00935 WP_000755274.1 196938..198092(-) (tsaP) [Acinetobacter baumannii strain OC070]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGGCAAACCACTCACT
TACAACCTCAAGTTCGCGTCGAAGCATTAAATAATAGTGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTCTCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACCCAGGGCATTCAAGTAGGCCAA
ATTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837Q7Q6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.479

100

0.995