Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LO741_RS20870 Genome accession   NZ_CP087290
Coordinates   4276629..4277258 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain APEC 102026     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4271629..4282258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO741_RS20850 (LO741_20800) ycbZ 4272030..4273790 (-) 1761 WP_000156476.1 Lon protease family protein -
  LO741_RS20855 (LO741_20805) matP 4273976..4274428 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LO741_RS20860 (LO741_20810) ompA 4274504..4275544 (-) 1041 WP_001314606.1 porin OmpA -
  LO741_RS20865 (LO741_20815) sulA 4275901..4276410 (-) 510 WP_187183336.1 SOS-induced cell division inhibitor SulA -
  LO741_RS20870 (LO741_20820) sxy/tfoX 4276629..4277258 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LO741_RS20875 (LO741_20825) yccS 4277221..4279383 (-) 2163 WP_074413612.1 YccS family putative transporter -
  LO741_RS20880 (LO741_20830) yccF 4279393..4279839 (-) 447 WP_001261236.1 YccF domain-containing protein -
  LO741_RS20885 (LO741_20835) helD 4279962..4282016 (+) 2055 WP_001317751.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=628365 LO741_RS20870 WP_000839153.1 4276629..4277258(+) (sxy/tfoX) [Escherichia coli strain APEC 102026]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=628365 LO741_RS20870 WP_000839153.1 4276629..4277258(+) (sxy/tfoX) [Escherichia coli strain APEC 102026]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1