Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LO742_RS08520 Genome accession   NZ_CP087287
Coordinates   1752479..1753108 (+) Length   209 a.a.
NCBI ID   WP_000839137.1    Uniprot ID   -
Organism   Escherichia coli strain APEC 16-1068     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1747479..1758108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO742_RS08500 (LO742_08470) ycbZ 1747879..1749639 (-) 1761 WP_000156501.1 Lon protease family protein -
  LO742_RS08505 (LO742_08475) matP 1749825..1750277 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  LO742_RS08510 (LO742_08480) ompA 1750355..1751395 (-) 1041 WP_001350588.1 porin OmpA -
  LO742_RS08515 (LO742_08485) sulA 1751751..1752260 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  LO742_RS08520 (LO742_08490) sxy/tfoX 1752479..1753108 (+) 630 WP_000839137.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LO742_RS08525 (LO742_08495) yccS 1753071..1755233 (-) 2163 WP_000875041.1 YccS family putative transporter -
  LO742_RS08530 (LO742_08500) yccF 1755243..1755689 (-) 447 WP_001261236.1 YccF domain-containing protein -
  LO742_RS08535 (LO742_08505) helD 1755812..1757866 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24055.99 Da        Isoelectric Point: 9.4081

>NTDB_id=628326 LO742_RS08520 WP_000839137.1 1752479..1753108(+) (sxy/tfoX) [Escherichia coli strain APEC 16-1068]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAGLE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=628326 LO742_RS08520 WP_000839137.1 1752479..1753108(+) (sxy/tfoX) [Escherichia coli strain APEC 16-1068]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGGACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986