Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LO739_RS07700 Genome accession   NZ_CP087280
Coordinates   1652363..1652989 (+) Length   208 a.a.
NCBI ID   WP_059308343.1    Uniprot ID   A0A9X3YCJ6
Organism   Leclercia adecarboxylata strain SH19PE29     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1647363..1657989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO739_RS07680 (LO739_07680) - 1647758..1649518 (-) 1761 WP_230431343.1 AAA family ATPase -
  LO739_RS07685 (LO739_07685) matP 1649704..1650159 (+) 456 WP_032617400.1 macrodomain Ter protein MatP -
  LO739_RS07690 (LO739_07690) ompA 1650226..1651281 (-) 1056 WP_103792031.1 porin OmpA -
  LO739_RS07695 (LO739_07695) sulA 1651636..1652145 (-) 510 WP_032617403.1 SOS-induced cell division inhibitor SulA -
  LO739_RS07700 (LO739_07700) sxy/tfoX 1652363..1652989 (+) 627 WP_059308343.1 TfoX/Sxy family DNA transformation protein Regulator
  LO739_RS07705 (LO739_07705) yccS 1652974..1655109 (-) 2136 WP_230431344.1 YccS family putative transporter -
  LO739_RS07710 (LO739_07710) - 1655128..1655574 (-) 447 WP_032617407.1 YccF domain-containing protein -
  LO739_RS07715 (LO739_07715) helD 1655698..1657752 (+) 2055 WP_230431345.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23878.43 Da        Isoelectric Point: 9.1279

>NTDB_id=628305 LO739_RS07700 WP_059308343.1 1652363..1652989(+) (sxy/tfoX) [Leclercia adecarboxylata strain SH19PE29]
MKKLSYERIYQSTKYLSPLGEVQHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAPYCAKNTTSYLTLMKRGRAVLLN
YYRVDEALWQDQNKLLQLSSLALEAARRERRERYKRDRLKDLPNLNFQLEILLNEAGITNEAALRALGAEQSWLKIRALN
KHLSYKVLFALEGAIVGLHEAALPELRRRELVEWYKTLPVENSPHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=628305 LO739_RS07700 WP_059308343.1 1652363..1652989(+) (sxy/tfoX) [Leclercia adecarboxylata strain SH19PE29]
ATGAAAAAGTTATCCTACGAGCGGATCTATCAATCCACGAAATATCTTTCACCCCTCGGAGAGGTCCAGCATCGCGCCCT
GTTTGGCGGATACACATTGGCGGTGGATGACGCAGTCTTTGCGATGGTGTCAGATGGGGAGTTGTACCTGCGTGCCTGTG
AAGAGAGCGCACCGTATTGCGCCAAAAATACCACCTCTTATCTGACGCTGATGAAGCGGGGGCGCGCGGTATTGCTGAAT
TATTACCGTGTCGATGAGGCGCTCTGGCAGGATCAGAATAAGCTTTTACAGCTCTCTTCACTTGCACTTGAAGCCGCGCG
GCGGGAACGTCGCGAGCGGTACAAACGCGACAGGCTGAAAGATTTACCCAATCTCAATTTTCAGCTTGAGATTCTGCTGA
ATGAGGCGGGCATCACCAACGAAGCAGCATTACGCGCCCTCGGTGCTGAGCAGAGCTGGCTAAAGATCAGAGCGCTTAAC
AAGCACCTGAGTTACAAAGTGCTGTTTGCGCTAGAGGGGGCAATAGTGGGGCTGCATGAAGCAGCGCTCCCGGAGCTCAG
GCGCCGGGAGCTGGTGGAGTGGTACAAAACGCTACCGGTAGAGAACAGTCCTCACTCCGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.561

98.558

0.567