Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KXU59_RS01985 Genome accession   NZ_CP087266
Coordinates   392874..394313 (+) Length   479 a.a.
NCBI ID   WP_244774585.1    Uniprot ID   -
Organism   Aeromonas veronii strain HD6448     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 387874..399313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXU59_RS01955 (LOS88_01955) mlaF 388451..389251 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  KXU59_RS01960 (LOS88_01960) - 389459..390454 (+) 996 WP_204382278.1 KpsF/GutQ family sugar-phosphate isomerase -
  KXU59_RS01965 (LOS88_01965) kdsC 390454..391008 (+) 555 WP_088868289.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  KXU59_RS01970 (LOS88_01970) lptC 391005..391565 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  KXU59_RS01975 (LOS88_01975) lptA 391552..392079 (+) 528 WP_244774625.1 lipopolysaccharide transport periplasmic protein LptA -
  KXU59_RS01980 (LOS88_01980) lptB 392083..392808 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  KXU59_RS01985 (LOS88_01985) rpoN/rpoN1 392874..394313 (+) 1440 WP_244774585.1 RNA polymerase factor sigma-54 Machinery gene
  KXU59_RS01990 (LOS88_01990) hpf 394334..394621 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  KXU59_RS01995 (LOS88_01995) ptsN 394624..395070 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KXU59_RS02000 (LOS88_02000) rapZ 395116..395982 (+) 867 WP_244774583.1 RNase adapter RapZ -
  KXU59_RS02005 (LOS88_02005) npr 396003..396275 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  KXU59_RS02010 (LOS88_02010) - 396293..398197 (-) 1905 WP_244774582.1 PTS sugar transporter subunit IIA -
  KXU59_RS02015 (LOS88_02015) - 398305..399045 (-) 741 WP_244774580.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53702.67 Da        Isoelectric Point: 4.3442

>NTDB_id=628251 KXU59_RS01985 WP_244774585.1 392874..394313(+) (rpoN/rpoN1) [Aeromonas veronii strain HD6448]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLILLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAESVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=628251 KXU59_RS01985 WP_244774585.1 392874..394313(+) (rpoN/rpoN1) [Aeromonas veronii strain HD6448]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GACGAGTTACCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGTGCGGGCCCCATCCATGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTGCAGGATTATCTGTTGTGGCAGATGCGACTAACACCGTTCA
GCGATGTGGATGCAGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTTCAGCACTT
CGATCCGGTCGGTATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTTGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATTTGATCCTGCTGCTGGAGCCGCGTCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AATCGGTGGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491