Detailed information NTG0628243

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: N0470_RS21405
• Genome accession: NZ_CP104326
• Coordinates: 4402513..4403538 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain THB42-F1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4397513..4408538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N0470_RS21385 (N0470_21380)	metJ	4398574..4398891 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
N0470_RS21390 (N0470_21385)	yiiX	4399075..4399683 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
N0470_RS21395 (N0470_21390)	rpmE	4399744..4399956 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
N0470_RS21400 (N0470_21395)	priA	4400159..4402357 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
N0470_RS21405 (N0470_21400)	cytR	4402513..4403538 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
N0470_RS21410 (N0470_21405)	ftsN	4403630..4404589 (+)	960	WP_000068828.1	cell division protein FtsN	-
N0470_RS21415 (N0470_21410)	hslV	4404682..4405212 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
N0470_RS21420 (N0470_21415)	hslU	4405222..4406553 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
N0470_RS21425 (N0470_21420)	menA	4406620..4407546 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
N0470_RS21430 (N0470_21425)	rraA	4407639..4408124 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
N0470_RS21435 (N0470_21430)	zapB	4408209..4408454 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=628243 N0470_RS21405 WP_000644904.1 4402513..4403538(+) (cytR) [Escherichia coli strain THB42-F1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=628243 N0470_RS21405 WP_000644904.1 4402513..4403538(+) (cytR) [Escherichia coli strain THB42-F1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628