Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LOK74_RS20160 Genome accession   NZ_CP087263
Coordinates   4143269..4144222 (-) Length   317 a.a.
NCBI ID   WP_230043783.1    Uniprot ID   -
Organism   Brevibacillus humidisoli strain MMS20-4M-10-Y     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4138269..4149222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOK74_RS20135 (LOK74_20135) - 4138623..4139087 (-) 465 WP_230043778.1 MarR family winged helix-turn-helix transcriptional regulator -
  LOK74_RS20140 (LOK74_20140) wrbA 4139217..4139825 (-) 609 WP_230043779.1 NAD(P)H:quinone oxidoreductase -
  LOK74_RS20145 (LOK74_20145) - 4140384..4141385 (-) 1002 WP_230043780.1 siderophore ABC transporter substrate-binding protein -
  LOK74_RS20150 (LOK74_20150) - 4141577..4142335 (-) 759 WP_230043781.1 ABC transporter ATP-binding protein -
  LOK74_RS20155 (LOK74_20155) - 4142329..4143279 (-) 951 WP_230043782.1 iron chelate uptake ABC transporter family permease subunit -
  LOK74_RS20160 (LOK74_20160) ceuB 4143269..4144222 (-) 954 WP_230043783.1 ABC transporter permease Machinery gene
  LOK74_RS20165 (LOK74_20165) - 4144487..4145749 (-) 1263 WP_230047073.1 MFS transporter -
  LOK74_RS24435 - 4145817..4146335 (-) 519 WP_420908699.1 GNAT family N-acetyltransferase -
  LOK74_RS20175 (LOK74_20175) - 4146431..4146973 (-) 543 WP_230043784.1 hypothetical protein -
  LOK74_RS20180 (LOK74_20180) - 4147072..4148517 (-) 1446 WP_230043785.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35243.84 Da        Isoelectric Point: 10.2377

>NTDB_id=628201 LOK74_RS20160 WP_230043783.1 4143269..4144222(-) (ceuB) [Brevibacillus humidisoli strain MMS20-4M-10-Y]
MKKRYLIPALIVLSIISIFVGVKELTPFDLFSLSKEQSQILLISRLPRLISLIVAGISMSIVGLIMQQLSQNKFVSPTTA
GTMDSARFGILVSMILFTSASPLQKMLVAFVFALLGTFLFMKILERVKYKDTIFIPLVGLMFGSIVSSMTTFFAYKYDLI
QNISSWLHGDFSMIMKGRYELILISVPLVIVAYLFANRFTIAGMGEEFSVNLGLRYKQVVNIGLIIVALVSSVVVLTVGM
LPFLGLIIPNIVTIYHGDNLKKSLIHTALLGAVFLLFCDILGRLIIYPYEIPIGLMVGVIGSGIFLYLLMRRRTYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=628201 LOK74_RS20160 WP_230043783.1 4143269..4144222(-) (ceuB) [Brevibacillus humidisoli strain MMS20-4M-10-Y]
ATGAAAAAGAGATACCTGATTCCAGCGTTGATTGTCCTATCGATCATTTCCATTTTTGTTGGGGTAAAAGAGCTTACTCC
TTTTGACTTGTTCAGTCTAAGCAAAGAACAGAGCCAGATCTTGCTGATCAGCAGGCTGCCTCGGTTGATCAGCCTCATTG
TCGCCGGCATCAGCATGAGCATTGTCGGTTTGATCATGCAGCAGCTGAGCCAGAACAAATTCGTATCGCCTACGACTGCC
GGAACGATGGATTCGGCCCGCTTCGGCATCTTGGTTTCGATGATTTTGTTTACTTCAGCAAGCCCGTTGCAGAAGATGCT
GGTTGCCTTTGTCTTTGCCTTGCTCGGCACCTTTCTCTTTATGAAGATACTGGAGAGGGTGAAGTACAAGGACACGATTT
TTATCCCGCTTGTCGGTTTGATGTTTGGCAGTATCGTCAGTTCGATGACCACCTTTTTTGCTTACAAGTATGATCTGATT
CAGAATATCTCCTCATGGCTGCATGGAGATTTTTCGATGATCATGAAGGGGCGGTATGAACTGATCCTGATCAGTGTTCC
GCTTGTGATCGTTGCGTACCTGTTTGCCAATCGGTTCACGATCGCGGGGATGGGGGAAGAGTTTTCCGTCAACCTGGGCC
TGCGTTACAAGCAAGTGGTCAACATTGGCTTAATCATCGTCGCCCTGGTATCATCGGTTGTTGTCCTGACCGTTGGCATG
CTGCCTTTTTTAGGCTTGATCATCCCCAACATCGTCACCATTTATCATGGCGATAATCTGAAAAAAAGCCTGATCCATAC
CGCTTTGCTGGGAGCCGTATTCCTCTTGTTCTGTGATATCCTGGGCCGGCTGATCATCTATCCTTATGAGATTCCGATCG
GTCTGATGGTTGGCGTCATCGGCAGCGGCATCTTTCTTTACTTGCTCATGAGGAGAAGGACATATGGACTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.716

98.738

0.521