Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LOY68_RS27655 Genome accession   NZ_CP087205
Coordinates   6169714..6171081 (-) Length   455 a.a.
NCBI ID   WP_054051427.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6164714..6176081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY68_RS27630 (LOY68_27605) - 6164874..6165563 (+) 690 WP_265041000.1 GntR family transcriptional regulator -
  LOY68_RS27635 (LOY68_27610) yjiA 6165663..6166634 (-) 972 WP_265041002.1 GTPase -
  LOY68_RS27640 (LOY68_27615) - 6166796..6166993 (-) 198 WP_054616680.1 YbdD/YjiX family protein -
  LOY68_RS27645 (LOY68_27620) - 6167009..6169075 (-) 2067 WP_265041004.1 carbon starvation CstA family protein -
  LOY68_RS27650 (LOY68_27625) - 6169236..6169604 (+) 369 WP_163911662.1 PilZ domain-containing protein -
  LOY68_RS27655 (LOY68_27630) radA 6169714..6171081 (-) 1368 WP_054051427.1 DNA repair protein RadA Machinery gene
  LOY68_RS27660 (LOY68_27635) - 6171127..6171681 (-) 555 WP_265041006.1 ankyrin repeat domain-containing protein -
  LOY68_RS27665 (LOY68_27640) katB 6171741..6173282 (-) 1542 WP_163911656.1 catalase KatB -
  LOY68_RS27670 (LOY68_27645) mscL 6173570..6173983 (+) 414 WP_054051433.1 large-conductance mechanosensitive channel protein MscL -
  LOY68_RS27675 (LOY68_27650) - 6174030..6174806 (-) 777 WP_265041009.1 ferredoxin--NADP reductase -
  LOY68_RS27680 (LOY68_27655) - 6175144..6175858 (+) 715 Protein_5444 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48789.25 Da        Isoelectric Point: 7.1316

>NTDB_id=628131 LOY68_RS27655 WP_054051427.1 6169714..6171081(-) (radA) [Pseudomonas sp. B21-053]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIRTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=628131 LOY68_RS27655 WP_054051427.1 6169714..6171081(-) (radA) [Pseudomonas sp. B21-053]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAGTG
CGGGGCCTGGAACACGCTGACCGAAACCATGGTCGAGAGCGGCGGCGCTGCGGCGCCCAGCGGTCGAACCGGGTGGACCG
GCCAACAAGCGCAGATCAGGACCCTGGCGGAAGTCAGCGTCGAAGAGATTCCGCGTTTTTCCACAGCCTCCAGCGAACTC
GATCGCGTGCTCGGCGGTGGCCTGGTGGACGGCTCGGTGGTGTTGATCGGCGGTGATCCCGGCATCGGCAAATCGACCAT
TCTGTTGCAAACCTTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGTGAGGAATCCCAGCAACAAGTGG
CCATGCGCGCCCGGCGTCTCGGTTTGCCCCAGGACAAGCTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGGCAGGAAAAGCCCAAGGTCATGGTGATCGATTCGATCCAGACGATTTTCACCGAACAACTGCAATCAGCACC
CGGCGGCGTGTCCCAGGTTCGCGAAAGTGCGGCGTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTGACCAAGGAAGGCGCCTTGGCCGGCCCGCGAGTGTTGGAGCACATGGTTGATACCGTGCTGTATTTCGAA
GGCGAATCCGATGGGCGTTTGCGGCTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAACTCGGCGTGTTCGG
CATGACCGACAAAGGCTTGAAAGAAGTCTCCAACCCTTCGGCAATTTTTCTCACGCGGGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTCGAAGTGCAGGCGCTGGTCGATGACAGTCATTTGGCC
AACCCGCGTCGGGTCACGTTGGGGCTGGATCAGAACCGCTTGGCCATGTTGCTGGCGGTGCTGCACCGTCACGGCGGGAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTAGTCGGCGGGGTCAAGGTACTGGAAACCGCGTCTGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGTCCGCTGCCGCATGATCTGCTGGTGTTTGGCGAAGTCGGCTTGTCGGGC
GAAGTGCGCCCGGTGCCGAGTGGTCAGGAACGCCTGAAAGAAGCGGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCGCCAAAAGAAGCCCCGCCGGGGTTGCAGATTATTGCGGTAACCCGACTGGAACAGGCTTTGGACGCATTAT
TCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(74-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466