Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LOY67_RS23765 Genome accession   NZ_CP087203
Coordinates   5458185..5459552 (-) Length   455 a.a.
NCBI ID   WP_265064695.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5453185..5464552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY67_RS23740 (LOY67_23715) - 5453324..5454037 (+) 714 WP_265064690.1 GntR family transcriptional regulator -
  LOY67_RS23745 (LOY67_23720) yjiA 5454029..5454997 (-) 969 WP_265064691.1 GTPase -
  LOY67_RS23750 (LOY67_23725) - 5455171..5455368 (-) 198 WP_265064692.1 YbdD/YjiX family protein -
  LOY67_RS23755 (LOY67_23730) - 5455385..5457451 (-) 2067 WP_265064693.1 carbon starvation CstA family protein -
  LOY67_RS23760 (LOY67_23735) - 5457611..5457967 (+) 357 WP_265064694.1 PilZ domain-containing protein -
  LOY67_RS23765 (LOY67_23740) radA 5458185..5459552 (-) 1368 WP_265064695.1 DNA repair protein RadA Machinery gene
  LOY67_RS23770 (LOY67_23745) - 5459595..5460143 (-) 549 WP_265067819.1 ankyrin repeat domain-containing protein -
  LOY67_RS23775 (LOY67_23750) katB 5460221..5461762 (-) 1542 WP_265064696.1 catalase KatB -
  LOY67_RS23780 (LOY67_23755) mscL 5462043..5462456 (+) 414 WP_265064697.1 large-conductance mechanosensitive channel protein MscL -
  LOY67_RS23785 (LOY67_23760) - 5462580..5463356 (-) 777 WP_265064698.1 ferredoxin--NADP reductase -
  LOY67_RS23790 (LOY67_23765) - 5463651..5464364 (+) 714 WP_265064699.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48832.24 Da        Isoelectric Point: 6.8987

>NTDB_id=628072 LOY67_RS23765 WP_265064695.1 5458185..5459552(-) (radA) [Pseudomonas sp. B21-056]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPTGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPQGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=628072 LOY67_RS23765 WP_265064695.1 5458185..5459552(-) (radA) [Pseudomonas sp. B21-056]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTTCCCAAATGGGCCGGCCAGTGCGGTGAGTG
CGGCGCCTGGAACACGTTGACCGAAACCATGGTGGAAAGCGGCGGTGCCGCGGCGCCCACCGGCCGCACCGGGTGGGCCG
GCCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAATCCCCCGGTTTTCCACCGCGTCCGGTGAACTG
GACCGTGTGTTGGGTGGCGGTCTGGTGGACGGCTCGGTGGTCTTGATCGGCGGCGACCCGGGCATCGGCAAATCCACCAT
CCTGCTGCAAACCTTGTGCAACATTGCCACGCGCATGCCGGCGCTGTACGTCACGGGCGAAGAGTCACAGCAGCAAGTCG
CCATGCGCGCCCGCCGCCTGGGACTGCCCCAGGATCAGTTGCGGGTGATGACCGAGACCTGCATCGAAACCATCATCGCC
ACGGCCCGCCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAGTTGCAATCGGCGCC
GGGCGGTGTGTCCCAGGTGCGCGAAAGCGCGGCGTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTCACCAAGGAGGGCTCGCTGGCGGGGCCACGGGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAG
GGCGAGTCCGATGGCCGCCTGCGTTTGTTGCGGGCGGTGAAGAATCGCTTTGGCGCCGTGAACGAGCTGGGTGTGTTCGG
CATGACCGACAGGGGGTTGAAAGAAGTCTCCAACCCTTCGGCGATCTTTCTGACGCGTGCCCAGGAAGAAGTACCGGGCA
GTGTGGTCATGGCTACGTGGGAAGGGACTCGACCGATGTTGGTGGAGGTGCAGGCGCTGGTGGATGACAGTCACCTGGCG
AACCCGCGCCGGGTCACCCTGGGGCTGGATCAGAACCGACTCGCCATGTTGTTGGCCGTGCTGCATCGACACGGTGGTAT
TCCGACCCACGACCAGGACGTTTTCCTCAACGTGGTGGGCGGTGTGAAAGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTCATGTCCAGCCTGCGCAACCGGCCGCTGCCCCATGATCTGCTGGTGTTCGGTGAAGTCGGCCTGTCGGGC
GAAGTCCGGCCGGTGCCCAGTGGGCAGGAGCGACTGAAAGAAGCGGCCAAACATGGTTTCAAACGTGCCATCGTGCCCAA
GGGCAACGCGCCGAAGGAGGCGCCGCAGGGGTTGCAGATCATTGCCGTGACGCGATTGGAGCAGGCGTTGGATGCGTTGT
TCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.053

100

0.462
  radA Streptococcus pneumoniae D39

46.053

100

0.462
  radA Streptococcus pneumoniae R6

46.053

100

0.462
  radA Streptococcus pneumoniae TIGR4

46.053

100

0.462
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459