Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY63_RS08265 Genome accession   NZ_CP087202
Coordinates   1806227..1806862 (+) Length   211 a.a.
NCBI ID   WP_010448848.1    Uniprot ID   A0A1H6NQM0
Organism   Pseudomonas asplenii strain B21-058     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1801227..1811862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY63_RS08245 (LOY63_08240) - 1801412..1802344 (+) 933 WP_010448856.1 ABC transporter ATP-binding protein -
  LOY63_RS08250 (LOY63_08245) - 1802341..1803120 (+) 780 WP_010448854.1 ABC transporter permease -
  LOY63_RS08255 (LOY63_08250) - 1803142..1803663 (-) 522 WP_010448852.1 DUF2062 domain-containing protein -
  LOY63_RS08260 (LOY63_08255) comA 1803800..1806028 (+) 2229 WP_265085552.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY63_RS08265 (LOY63_08260) exbB 1806227..1806862 (+) 636 WP_010448848.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY63_RS08270 (LOY63_08265) - 1806859..1807287 (+) 429 WP_029532388.1 biopolymer transporter ExbD -
  LOY63_RS08275 (LOY63_08270) lpxK 1807287..1808297 (+) 1011 WP_019362450.1 tetraacyldisaccharide 4'-kinase -
  LOY63_RS08280 (LOY63_08275) - 1808324..1808509 (+) 186 WP_010447200.1 Trm112 family protein -
  LOY63_RS08285 (LOY63_08280) kdsB 1808506..1809270 (+) 765 WP_265085553.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY63_RS08290 (LOY63_08285) - 1809270..1809734 (+) 465 WP_010447196.1 low molecular weight protein-tyrosine-phosphatase -
  LOY63_RS08295 (LOY63_08290) murB 1809731..1810750 (+) 1020 WP_029532391.1 UDP-N-acetylmuramate dehydrogenase -
  LOY63_RS08300 (LOY63_08295) - 1811070..1811540 (+) 471 WP_010447193.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22997.13 Da        Isoelectric Point: 6.8768

>NTDB_id=628037 LOY63_RS08265 WP_010448848.1 1806227..1806862(+) (exbB) [Pseudomonas asplenii strain B21-058]
MWELVKSGGWMMLPIILSSIAAVGIVAERLWTLRASRVTPEHLLGQVWVWIRDKQLDKEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMSPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLIVGIPAVFFHRFLQRRIDELVVGMEQQAIKLVEVVQGDRDVEMPEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=628037 LOY63_RS08265 WP_010448848.1 1806227..1806862(+) (exbB) [Pseudomonas asplenii strain B21-058]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCGGCCGTGGGGATCGTCGC
CGAGCGTCTCTGGACCTTGCGCGCCAGCCGCGTGACCCCGGAGCATCTGTTGGGGCAGGTCTGGGTCTGGATCCGTGACA
AGCAACTGGACAAGGAAAAACTCAAGCAGCTGCGCGCCGATTCGCCCTTGGGCGAAATCCTCGCTGCGGGCCTGGCGAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCCGCTGCCCGGGTGATCCACGAACTGGAGCGCTACAT
CAATGCCCTCGGCACCATCGCCGCCATGTCGCCGCTGCTCGGTCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCTCATTCATGGGCTCGGGCATGACCACCAACGCGGCGGTACTCGCCGGTGGTATTTCCAAGGCGCTGATCACCACCGCC
TCAGGCCTGATCGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCGATCAAGCTGGTCGAGGTGGTCCAGGGTGACCGTGATGTGGAAATGCCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H6NQM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829