Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   N2K92_RS12735 Genome accession   NZ_CP104297
Coordinates   2699747..2700109 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain ZHOU     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2694747..2705109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K92_RS12725 (N2K92_12740) - 2697025..2699103 (-) 2079 WP_071210569.1 methyl-accepting chemotaxis protein -
  N2K92_RS12730 (N2K92_12745) - 2699150..2699686 (-) 537 WP_071210570.1 chemotaxis protein CheW -
  N2K92_RS12735 (N2K92_12750) pilH 2699747..2700109 (-) 363 WP_000101096.1 response regulator Machinery gene
  N2K92_RS12740 (N2K92_12755) pilG 2700133..2700516 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  N2K92_RS12745 (N2K92_12760) - 2700799..2701437 (+) 639 WP_002027721.1 hypothetical protein -
  N2K92_RS12750 (N2K92_12765) - 2701497..2702615 (+) 1119 WP_071210572.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=627951 N2K92_RS12735 WP_000101096.1 2699747..2700109(-) (pilH) [Acinetobacter baumannii strain ZHOU]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=627951 N2K92_RS12735 WP_000101096.1 2699747..2700109(-) (pilH) [Acinetobacter baumannii strain ZHOU]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392