NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	LOY34_RS03460	Genome accession	NZ_CP087199
Coordinates	781480..782847 (+)	Length	455 a.a.
NCBI ID	WP_258664284.1	Uniprot ID	-
Organism	Pseudomonas sp. B21-009
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 776480..787847

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY34_RS03430 (LOY34_03425)	cydB	776502..777509 (+)	1008	WP_045195891.1	cytochrome d ubiquinol oxidase subunit II	-
LOY34_RS03435 (LOY34_03430)	-	777522..777677 (+)	156	WP_045195893.1	DUF2474 domain-containing protein	-
LOY34_RS03440 (LOY34_03435)	-	777798..778922 (-)	1125	WP_195885643.1	methyltransferase	-
LOY34_RS03445 (LOY34_03440)	-	779017..779721 (-)	705	WP_195885644.1	autoinducer binding domain-containing protein	-
LOY34_RS03450 (LOY34_03445)	-	780066..780842 (+)	777	WP_195885645.1	ferredoxin--NADP reductase	-
LOY34_RS03455 (LOY34_03450)	mscL	780891..781304 (-)	414	WP_093387855.1	large-conductance mechanosensitive channel protein MscL	-
LOY34_RS03460 (LOY34_03455)	radA	781480..782847 (+)	1368	WP_258664284.1	DNA repair protein RadA	Machinery gene
LOY34_RS03465 (LOY34_03460)	-	782953..783456 (+)	504	WP_045195901.1	RNA polymerase sigma factor	-
LOY34_RS03470 (LOY34_03465)	-	783525..784523 (+)	999	WP_230090922.1	FecR domain-containing protein	-
LOY34_RS03475 (LOY34_03470)	-	784659..785057 (+)	399	WP_258664286.1	hypothetical protein	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48703.23 Da Isoelectric Point: 7.0801

                                >NTDB_id=627950 LOY34_RS03460 WP_258664284.1 781480..782847(+) (radA) [Pseudomonas sp. B21-009]

MAKAKRMYGCTECGATFPKWAGQCAECGAWNTLVETVLESGAAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFTTASAEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA

TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLS

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAIMSSLRNRALDNGLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=627950 LOY34_RS03460 WP_258664284.1 781480..782847(+) (radA) [Pseudomonas sp. B21-009]

ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCGAAATGGGCCGGGCAATGCGCTGAATG

CGGTGCCTGGAACACCCTGGTCGAGACCGTGCTAGAGAGTGGCGCGGCCGCCGCACCGAGCGGGCGCACCGGCTGGGCCG

GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGCTTTACTACCGCCAGTGCCGAACTC

GACCGGGTACTCGGCGGCGGCCTGGTCGACGGTTCGGTGGTGCTGATCGGTGGTGATCCGGGCATCGGCAAGTCGACCAT

CCTCCTGCAGACCCTGTGCAACATCGCTACGCGCATGCCGGCGCTGTACGTCACCGGCGAAGAGTCCCAGCAGCAGGTGG

CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGACAAGCTGCGGGTGATGACCGAAACCTGTATCGAGACCATCATCGCC

ACCGCCCGGCTGGAGAAGCCCAAGGTGATGGTCATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAGTCGGCGCC

TGGCGGTGTTTCCCAGGTGCGCGAAAGCGCAGCCTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTCG

TCGGTCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGCTCGAGCACATGGTCGATACCGTGCTGTATTTCGAG

GGCGAATCCGACGGCCGCTTGCGTTTGCTGCGCGCGGTGAAAAACCGTTTTGGCGCGGTCAACGAGCTGGGCGTGTTCGG

CATGACCGACCGTGGCCTGAAGGAAGTCTCCAACCCCTCGGCGATCTTTCTTACGCGTGCCCAGGAAGAAGTACCGGGCA

GCGTGGTCATGGCCACCTGGGAAGGTACCCGGCCGATGCTGGTGGAGGTTCAGGCCCTGGTCGATGACAGCCACCTGTCC

AACCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCATCGCCATGGCGGCAT

CCCTACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACGGCCTCCGACCTGGCGCTGA

TGGCGGCGATCATGTCCAGCCTGCGCAACCGCGCGCTGGACAACGGCCTGCTGGTGTTTGGCGAGGTTGGCTTGTCTGGC

GAAGTGCGCCCGGTGCCGAGCGGCCAGGAGCGTTTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGCGCCATTGTGCCCAA

GGGCAACGCCCCGAAGGAAGCGCCGCCTGGGCTGCAGGTGATTGCCGTGACCCGCCTTGAACAGGCGCTGGACGCGCTGT

TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(75-221)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.465	100	0.486
radA	Streptococcus pneumoniae Rx1	46.405	100	0.468
radA	Streptococcus pneumoniae R6	46.405	100	0.468
radA	Streptococcus pneumoniae TIGR4	46.405	100	0.468
radA	Streptococcus pneumoniae D39	46.405	100	0.468
radA	Streptococcus mitis SK321	46.593	100	0.466
radA	Streptococcus mitis NCTC 12261	46.374	100	0.464

Detailed information NTG0627950