Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LOY36_RS26725 Genome accession   NZ_CP087193
Coordinates   5940579..5940983 (-) Length   134 a.a.
NCBI ID   WP_007897954.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-019     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5935579..5945983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY36_RS26710 (LOY36_26670) - 5937493..5939550 (-) 2058 WP_258671472.1 methyl-accepting chemotaxis protein -
  LOY36_RS26715 (LOY36_26675) - 5939591..5940145 (-) 555 WP_019650233.1 chemotaxis protein CheW -
  LOY36_RS26720 (LOY36_26680) pilH 5940156..5940521 (-) 366 WP_007897961.1 twitching motility response regulator PilH -
  LOY36_RS26725 (LOY36_26685) pilG 5940579..5940983 (-) 405 WP_007897954.1 twitching motility response regulator PilG Regulator
  LOY36_RS26730 (LOY36_26690) gshB 5941206..5942159 (+) 954 WP_018928715.1 glutathione synthase -
  LOY36_RS26735 (LOY36_26695) - 5942237..5943136 (+) 900 WP_258671473.1 energy transducer TonB -
  LOY36_RS26740 (LOY36_26700) - 5943264..5943836 (+) 573 WP_019650230.1 YqgE/AlgH family protein -
  LOY36_RS26745 (LOY36_26705) ruvX 5943836..5944282 (+) 447 WP_018928712.1 Holliday junction resolvase RuvX -
  LOY36_RS26750 (LOY36_26710) pyrR 5944382..5944885 (+) 504 WP_018928711.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  LOY36_RS26755 (LOY36_26715) - 5944913..5945917 (+) 1005 WP_007939362.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14619.98 Da        Isoelectric Point: 7.2443

>NTDB_id=627801 LOY36_RS26725 WP_007897954.1 5940579..5940983(-) (pilG) [Pseudomonas sp. B21-019]
MEQHSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIQAHVPGFAVVSPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=627801 LOY36_RS26725 WP_007897954.1 5940579..5940983(-) (pilG) [Pseudomonas sp. B21-019]
ATGGAACAGCATTCCAGCGCCTTGAAGGTCATGGTGATCGATGATTCGAAAACGATTCGTCGCACCGCCGAAACGCTGTT
GAAAAACGTGGGCTGTGAAGTCATCACCGCAATCGATGGTTTCGATGCCCTGGCCAAGATTGCCGACAATCACCCGGGCA
TCATCTTTGTCGACATCATGATGCCGCGTCTGGATGGTTATCAGACCTGCGCGTTGATCAAGAACAACAGTGCGTTCAAG
TCCACGCCAGTGATTATGCTGTCGTCCAGGGACGGGTTGTTCGACAAGGCCAAGGGGCGGATCGTCGGCTCCGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAACGCGATCCAGGCCCACGTACCGGGCTTTGCCGTCGTTTCGCCGC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

93.284

0.701