Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LOY36_RS24610 Genome accession   NZ_CP087193
Coordinates   5486681..5488048 (-) Length   455 a.a.
NCBI ID   WP_019581287.1    Uniprot ID   A0AB33E587
Organism   Pseudomonas sp. B21-019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5481681..5493048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY36_RS24585 (LOY36_24545) - 5481965..5482654 (+) 690 WP_258671204.1 GntR family transcriptional regulator -
  LOY36_RS24590 (LOY36_24550) yjiA 5482748..5483719 (-) 972 WP_258671205.1 GTPase -
  LOY36_RS24595 (LOY36_24555) - 5483841..5484038 (-) 198 WP_007937254.1 YbdD/YjiX family protein -
  LOY36_RS24600 (LOY36_24560) - 5484054..5486120 (-) 2067 WP_258671206.1 carbon starvation CstA family protein -
  LOY36_RS24605 (LOY36_24565) - 5486281..5486649 (+) 369 WP_019650945.1 PilZ domain-containing protein -
  LOY36_RS24610 (LOY36_24570) radA 5486681..5488048 (-) 1368 WP_019581287.1 DNA repair protein RadA Machinery gene
  LOY36_RS24615 (LOY36_24575) - 5488094..5488648 (-) 555 WP_258671207.1 ankyrin repeat domain-containing protein -
  LOY36_RS24620 (LOY36_24580) katB 5488706..5490247 (-) 1542 WP_258671208.1 catalase KatB -
  LOY36_RS24625 (LOY36_24585) mscL 5490533..5490946 (+) 414 WP_019650942.1 large-conductance mechanosensitive channel protein MscL -
  LOY36_RS24630 (LOY36_24590) - 5490991..5491767 (-) 777 WP_019650941.1 ferredoxin--NADP reductase -
  LOY36_RS24635 (LOY36_24595) - 5492062..5492772 (+) 711 WP_258671209.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48787.24 Da        Isoelectric Point: 6.8987

>NTDB_id=627798 LOY36_RS24610 WP_019581287.1 5486681..5488048(-) (radA) [Pseudomonas sp. B21-019]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=627798 LOY36_RS24610 WP_019581287.1 5486681..5488048(-) (radA) [Pseudomonas sp. B21-019]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGTTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACGCTGACCGAAACCATGGTGGAGAGTGGCGGCGCCGCGGCCCCCAGCGGTCGCACCGGTTGGACCG
GCCAGCAGGCACAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATTCCGCGGTTCTCCACGGCGTCCAGCGAGCTA
GATCGCGTTTTGGGCGGCGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGTGGTGACCCCGGTATCGGCAAGTCGACGAT
TCTGTTGCAAACCTTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTATGTCACCGGCGAAGAGTCCCAGCAACAAGTGG
CCATGCGTGCCCGGCGGCTGGGCTTGCCTCAGGATCAACTGCGGGTAATGACTGAAACCTGCATTGAAACCATCATTGCC
ACCGCCCGGCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATTCAGACGATCTTTACCGAGCAACTGCAATCGGCACC
GGGCGGTGTCTCCCAGGTGCGCGAAAGTGCGGCATTGCTGGTGCGCTATGCCAAGCAAAGCGGCACGGCGATTTTCCTCG
TGGGCCATGTCACCAAAGAAGGCGCTCTGGCCGGCCCCCGAGTGCTGGAGCACATGGTCGACACCGTTCTGTATTTCGAA
GGCGAATCCGATGGTCGCCTGCGTTTGCTGCGGGCGGTGAAAAACCGGTTCGGTGCGGTGAATGAACTGGGCGTGTTCGG
CATGACCGACAAAGGACTGAAAGAAGTCTCCAACCCTTCGGCGATTTTCCTGACACGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTAGATGACAGCCACCTGGCC
AACCCGCGCCGGGTGACGCTCGGTCTGGATCAGAATCGCCTGGCCATGTTGTTGGCGGTTTTGCACCGCCACGGCGGCAT
CCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGTGGTGTGAAGGTCCTGGAAACCGCTTCCGACCTGGCGCTGA
TGGCGGCGGTCATGTCCAGTTTGCGCAACCGGCCGCTGCCGCACGATCTGCTGGTGTTTGGCGAAGTCGGGTTGTCGGGT
GAAGTACGCCCGGTACCGAGTGGCCAGGAGCGCTTGAAAGAAGCGGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAACGCGCCGAAAGAGCCGCCGCCGGGGTTGCAGATTATCGCCGTGACGCGGCTGGAACAGGCCCTCGACGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466