Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LOY31_RS25060 Genome accession   NZ_CP087192
Coordinates   5573184..5574551 (-) Length   455 a.a.
NCBI ID   WP_039771749.1    Uniprot ID   A0A2N8E079
Organism   Pseudomonas sp. B21-021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5568184..5579551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY31_RS25030 (LOY31_25010) - 5568410..5569120 (+) 711 WP_258712335.1 GntR family transcriptional regulator -
  LOY31_RS25035 (LOY31_25015) yjiA 5569234..5570214 (-) 981 WP_221534810.1 GTPase -
  LOY31_RS25045 (LOY31_25025) - 5570376..5570573 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  LOY31_RS25050 (LOY31_25030) - 5570589..5572655 (-) 2067 WP_007950983.1 carbon starvation CstA family protein -
  LOY31_RS25055 (LOY31_25035) - 5572815..5573183 (+) 369 WP_064599557.1 PilZ domain-containing protein -
  LOY31_RS25060 (LOY31_25040) radA 5573184..5574551 (-) 1368 WP_039771749.1 DNA repair protein RadA Machinery gene
  LOY31_RS25065 (LOY31_25045) katB 5574695..5576233 (-) 1539 WP_221534811.1 catalase KatB -
  LOY31_RS25070 (LOY31_25050) mscL 5576519..5576932 (+) 414 WP_085608712.1 large-conductance mechanosensitive channel protein MscL -
  LOY31_RS25075 (LOY31_25055) - 5576965..5577741 (-) 777 WP_085608713.1 ferredoxin--NADP reductase -
  LOY31_RS25080 (LOY31_25060) - 5578038..5578745 (+) 708 WP_127800020.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48729.20 Da        Isoelectric Point: 6.8987

>NTDB_id=627769 LOY31_RS25060 WP_039771749.1 5573184..5574551(-) (radA) [Pseudomonas sp. B21-021]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKTMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=627769 LOY31_RS25060 WP_039771749.1 5573184..5574551(-) (radA) [Pseudomonas sp. B21-021]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAATG
CGGCGCCTGGAACACCCTGACCGAAACCATGGTCGAGAGCGGCGGTGCGGCCGCCCCGAGCGGGCGCACCGGCTGGGCCG
GGCAGCAGGCCCAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAGATTCCGCGTTTTTCCACAGCCTCCGGCGAACTC
GACCGAGTGCTCGGCGGTGGTCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAATCGACGAT
TCTGTTGCAGACCCTGTGCAACCTCGCCAAGACCATGCCGGCGCTGTACGTCACCGGTGAGGAATCCCAGCAACAGGTCG
CCATGCGCGCACGCCGCCTGGGCCTGCCGCAGGATCAACTGCGGGTCATGACCGAAACCTGTATCGAAACCATCATCGCC
ACCGCCCGTCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCGCC
GGGCGGCGTGTCCCAGGTACGCGAAAGTGCGGCGTTGCTGGTGCGTTACGCCAAGCAAAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCGCTCGCAGGGCCGCGGGTTCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAGTCCGACGGTCGGTTGCGTTTGCTGCGAGCGGTGAAAAACCGTTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAGGAAGTCTCCAACCCTTCGGCGATTTTTCTCACCCGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTTCAGGCGCTGGTGGATGACAGCCATCTGGCC
AATCCGCGCCGGGTGACGCTGGGTCTGGATCAGAATCGTCTGGCGATGCTGTTGGCGGTGCTGCACCGTCATGGCGGCAT
TCCGACTCACGATCAGGACGTTTTCCTCAACGTGGTCGGCGGGGTGAAAGTACTGGAAACCGCGTCTGACCTGGCGTTGA
TGGCCGCCGTCATGTCGAGCCTGCGCAACCGGCCGTTGCCCCATGACTTGCTGGTGTTCGGTGAAGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTACCGAGCGGTCAGGAGCGATTGAAGGAAGCCGCCAAGCACGGCTTCAAGCGTGCGATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCACCGCCAGGCTTGCAGATCATTGCGGTGACACGTCTGGAGCAGGCGCTGGACTCGTTGT
TCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(81-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8E079

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464