Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY42_RS18500 Genome accession   NZ_CP087190
Coordinates   4139305..4139940 (-) Length   211 a.a.
NCBI ID   WP_110703965.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-023     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4134305..4144940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY42_RS18470 (LOY42_18445) murB 4135404..4136423 (-) 1020 WP_258598735.1 UDP-N-acetylmuramate dehydrogenase -
  LOY42_RS18475 (LOY42_18450) - 4136420..4136884 (-) 465 WP_258598737.1 low molecular weight protein-tyrosine-phosphatase -
  LOY42_RS18480 (LOY42_18455) kdsB 4136884..4137648 (-) 765 WP_139672644.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY42_RS18485 (LOY42_18460) - 4137645..4137830 (-) 186 WP_003247142.1 Trm112 family protein -
  LOY42_RS18490 (LOY42_18465) lpxK 4137864..4138874 (-) 1011 WP_110703899.1 tetraacyldisaccharide 4'-kinase -
  LOY42_RS18495 (LOY42_18470) - 4138874..4139308 (-) 435 WP_023632003.1 biopolymer transporter ExbD -
  LOY42_RS18500 (LOY42_18475) exbB 4139305..4139940 (-) 636 WP_110703965.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY42_RS18505 (LOY42_18480) - 4140060..4142269 (-) 2210 Protein_3650 DNA internalization-related competence protein ComEC/Rec2 -
  LOY42_RS18510 (LOY42_18485) - 4142414..4143070 (+) 657 WP_258598743.1 DUF2062 domain-containing protein -
  LOY42_RS18515 (LOY42_18490) - 4142954..4143733 (-) 780 WP_023631459.1 ABC transporter permease -
  LOY42_RS18520 (LOY42_18495) - 4143730..4144662 (-) 933 WP_110703895.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22803.06 Da        Isoelectric Point: 7.3616

>NTDB_id=627714 LOY42_RS18500 WP_110703965.1 4139305..4139940(-) (exbB) [Pseudomonas sp. B21-023]
MWELVKSGGWMMLPIILSSIAAMAIVGERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627714 LOY42_RS18500 WP_110703965.1 4139305..4139940(-) (exbB) [Pseudomonas sp. B21-023]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCTGCCATGGCAATCGTCGG
CGAGCGCCTGTGGACCTTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCGCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAATGCCGCCGTGCTGGCTGGGGGTATTTCCAAGGCCCTGGTCACTACCGCG
GCCGGCCTGATGGTCGGCATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCGATCAAGCTGGTCGAGGTGTTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825