Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY29_RS09290 Genome accession   NZ_CP087189
Coordinates   2033977..2036208 (+) Length   743 a.a.
NCBI ID   WP_258611592.1    Uniprot ID   -
Organism   Pseudomonas protegens strain B21-024     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2028977..2041208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY29_RS09265 (LOY29_09255) - 2030102..2030761 (+) 660 WP_011060094.1 transglutaminase family protein -
  LOY29_RS09270 (LOY29_09260) - 2030804..2031427 (+) 624 WP_011060095.1 glutathione S-transferase family protein -
  LOY29_RS09275 (LOY29_09265) - 2031560..2032492 (+) 933 WP_011060096.1 ABC transporter ATP-binding protein -
  LOY29_RS09280 (LOY29_09270) - 2032489..2033268 (+) 780 WP_011060097.1 ABC transporter permease -
  LOY29_RS09285 (LOY29_09275) - 2033322..2033837 (-) 516 WP_258611591.1 DUF2062 domain-containing protein -
  LOY29_RS09290 (LOY29_09280) comA 2033977..2036208 (+) 2232 WP_258611592.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY29_RS09295 (LOY29_09285) exbB 2036311..2036946 (+) 636 WP_011060100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY29_RS09300 (LOY29_09290) - 2036943..2037371 (+) 429 WP_011060101.1 biopolymer transporter ExbD -
  LOY29_RS09305 (LOY29_09295) lpxK 2037371..2038381 (+) 1011 WP_015634697.1 tetraacyldisaccharide 4'-kinase -
  LOY29_RS09310 (LOY29_09300) - 2038406..2038591 (+) 186 WP_011060103.1 Trm112 family protein -
  LOY29_RS09315 (LOY29_09305) kdsB 2038588..2039352 (+) 765 WP_011060104.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY29_RS09320 (LOY29_09310) - 2039352..2039816 (+) 465 WP_015634698.1 low molecular weight protein-tyrosine-phosphatase -
  LOY29_RS09325 (LOY29_09315) murB 2039813..2040832 (+) 1020 WP_011060106.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81401.79 Da        Isoelectric Point: 10.9962

>NTDB_id=627682 LOY29_RS09290 WP_258611592.1 2033977..2036208(+) (comA) [Pseudomonas protegens strain B21-024]
MRSAMLALAAGLLALGFMPALPPGWLLLFMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLEAQTRWLEG
RVSGLPEQAGGVVRFELEDAQARRERLPRRMRLAWREGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRERLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFA
VAGLARHGLWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAIGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLAVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWSMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPEALPAGLQARPCDSGLSWVWNGVRFRQWQWAAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLDMAIYDSAEQGALRLQL
GAFGAAHGLREQRRFWREPPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=627682 LOY29_RS09290 WP_258611592.1 2033977..2036208(+) (comA) [Pseudomonas protegens strain B21-024]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCGGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTTTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTCTCCGCGCAGTCGGCCCTGGATGATCGCCTGGCGCCGCGCCTGGAGGCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCGGCT
GCCCCGGCGCATGCGGCTGGCCTGGCGTGAGGGCCCGGCGCTCAAGAGTGGCGAGCGTTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTGGCACCGGCCCCGCAGGCCTGGCGGCAAGGCTTGCGCGAGCGCTTGCTAGAGGTCGA
GGCACAGGGGCGCGGTGCGGGGCTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACCTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCGCG
GTGGCCGGGCTGGCCCGCCATGGTCTCTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCTTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCATTGGCCTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGGCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTCTGGAGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTCCTGGCGGTC
TGGCCACCCCTGGCGCGCGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTTGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGGACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGAGGCCAGCCCGAAGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGCGGCGGCGACCGACGGCA
ATCAGGCTTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCCTGCTGCTCACCGGGGACATCGACGCCCGTGCCGAG
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCACCCCATCACGGCAGCCGCACCTCTTCATC
CATGGCCTTGCTGCAACGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGGCGGGGCAATGCCTTCGGCCACCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGCGCCGAACAGGGTGCCCTGAGGCTGCAACTG
GGGGCCTTCGGGGCGGCGCATGGCCTTCGCGAGCAGCGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.714

96.501

0.624