Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PALA1_RS01880 Genome accession   NZ_CP104254
Coordinates   408567..409946 (+) Length   459 a.a.
NCBI ID   WP_023094490.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403567..414946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA1_RS01860 (PALA1_00369) - 404404..404970 (-) 567 WP_003084491.1 hypothetical protein -
  PALA1_RS01865 (PALA1_00370) rsmD 404973..405569 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PALA1_RS01870 (PALA1_00371) - 405569..407056 (-) 1488 WP_023100747.1 M16 family metallopeptidase -
  PALA1_RS01875 (PALA1_00372) - 407049..408446 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  PALA1_RS01880 (PALA1_00373) pilA 408567..409946 (+) 1380 WP_023094490.1 signal recognition particle-docking protein FtsY Machinery gene
  PALA1_RS01885 (PALA1_00374) ftsE 409943..410614 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  PALA1_RS01890 (PALA1_00375) ftsX 410614..411621 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  PALA1_RS01895 (PALA1_00376) rpoH 411735..412589 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  PALA1_RS01900 (PALA1_00377) - 412654..413259 (+) 606 WP_003084511.1 hypothetical protein -
  PALA1_RS01905 (PALA1_00378) mtgA 413264..413995 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  PALA1_RS01910 (PALA1_00379) - 414032..414409 (+) 378 WP_021263126.1 DUF423 domain-containing protein -
  PALA1_RS01915 (PALA1_00380) thiS 414512..414712 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48844.28 Da        Isoelectric Point: 4.4808

>NTDB_id=627662 PALA1_RS01880 WP_023094490.1 408567..409946(+) (pilA) [Pseudomonas aeruginosa strain PALA1]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQG
LSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRP
VEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADS
ASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVEL
TGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=627662 PALA1_RS01880 WP_023094490.1 408567..409946(+) (pilA) [Pseudomonas aeruginosa strain PALA1]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGC
CCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGG
CTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCT
CGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGC
GCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCG
GTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGAC
CACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCG
CTGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCC
GCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCT
GCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATG
AGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTG
ACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGTCTGCC
GATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCG
CAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(254-453)

SRP54-type protein, helical bundle domain (SRP54_N)

(169-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.488

74.946

0.401