Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY23_RS09440 Genome accession   NZ_CP087182
Coordinates   2044822..2047053 (+) Length   743 a.a.
NCBI ID   WP_258718316.1    Uniprot ID   -
Organism   Pseudomonas protegens strain B21-030     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2039822..2052053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY23_RS09415 (LOY23_09405) - 2040947..2041606 (+) 660 WP_011060094.1 transglutaminase family protein -
  LOY23_RS09420 (LOY23_09410) - 2041649..2042272 (+) 624 WP_011060095.1 glutathione S-transferase family protein -
  LOY23_RS09425 (LOY23_09415) - 2042405..2043337 (+) 933 WP_011060096.1 ABC transporter ATP-binding protein -
  LOY23_RS09430 (LOY23_09420) - 2043334..2044113 (+) 780 WP_011060097.1 ABC transporter permease -
  LOY23_RS09435 (LOY23_09425) - 2044167..2044682 (-) 516 WP_015634695.1 DUF2062 domain-containing protein -
  LOY23_RS09440 (LOY23_09430) comA 2044822..2047053 (+) 2232 WP_258718316.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY23_RS09445 (LOY23_09435) exbB 2047156..2047791 (+) 636 WP_011060100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY23_RS09450 (LOY23_09440) - 2047788..2048216 (+) 429 WP_011060101.1 biopolymer transporter ExbD -
  LOY23_RS09455 (LOY23_09445) lpxK 2048216..2049226 (+) 1011 WP_077933611.1 tetraacyldisaccharide 4'-kinase -
  LOY23_RS09460 (LOY23_09450) - 2049251..2049436 (+) 186 WP_011060103.1 Trm112 family protein -
  LOY23_RS09465 (LOY23_09455) kdsB 2049433..2050197 (+) 765 WP_011060104.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY23_RS09470 (LOY23_09460) - 2050197..2050661 (+) 465 WP_123430255.1 low molecular weight protein-tyrosine-phosphatase -
  LOY23_RS09475 (LOY23_09465) murB 2050658..2051677 (+) 1020 WP_011060106.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81352.69 Da        Isoelectric Point: 10.9966

>NTDB_id=627496 LOY23_RS09440 WP_258718316.1 2044822..2047053(+) (comA) [Pseudomonas protegens strain B21-030]
MRSAMLALAAGLLALGFMPALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLESQTRWLEG
RVSGLPEQAGGVVRFELEDAQARRERLPRRMRLAWREGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFA
VAGLARHGHWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAIGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLAVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWAAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLDMAIYDSAEQGALRLQL
GAFGAAHGLREQRRFWREPPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=627496 LOY23_RS09440 WP_258718316.1 2044822..2047053(+) (comA) [Pseudomonas protegens strain B21-030]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCGGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTGTCCGCGCAGTCGGCCCTGGATGATCGCCTGGCGCCGCGCCTGGAGTCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCGGCT
GCCCCGGCGCATGCGCCTGGCCTGGCGTGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTGGCACCGGCCCCGCAGGCCTGGCGGCAAGGCTTGCGCCAGCGCTTGCTAGAGGTCGA
GGCTCAGGGGCGCGGTGCGGGGTTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACCTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCGCG
GTGGCCGGGCTGGCCCGCCATGGTCACTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCATTGGCCTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTACTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGGCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTCCTGGCGGTC
TGGCCACCCCTGGCGCGCGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGGACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAGCCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGCGGCGGCGACCGACGGCA
ATCAGGCCTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCCTGCTGCTCACCGGGGACATCGACGCCCGTGCTGAG
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCCCCCCATCACGGCAGCCGCACCTCTTCATC
CATGGCCTTGCTGCAACGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGGCGGGGCAATGCCTTCGGCCACCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGTGCCGAACAGGGCGCTCTGAGGCTGCAACTG
GGGGCCTTCGGGGCGGCGCATGGGCTTCGCGAGCAGCGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.575

96.501

0.623