Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LOY54_RS01960 Genome accession   NZ_CP087180
Coordinates   439210..439620 (+) Length   136 a.a.
NCBI ID   WP_258609012.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-032     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 434210..444620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY54_RS01930 (LOY54_01930) ruvX 434787..435218 (-) 432 WP_093376944.1 Holliday junction resolvase RuvX -
  LOY54_RS01935 (LOY54_01935) - 435218..435787 (-) 570 WP_258610680.1 YqgE/AlgH family protein -
  LOY54_RS01940 (LOY54_01940) - 435859..436842 (-) 984 WP_093376935.1 ankyrin repeat domain-containing protein -
  LOY54_RS01945 (LOY54_01945) - 436927..437832 (-) 906 WP_038997538.1 energy transducer TonB -
  LOY54_RS01950 (LOY54_01950) gshB 437942..438895 (-) 954 WP_258609009.1 glutathione synthase -
  LOY54_RS01955 (LOY54_01955) - 438894..439172 (+) 279 WP_258609010.1 hypothetical protein -
  LOY54_RS01960 (LOY54_01960) pilG 439210..439620 (+) 411 WP_258609012.1 twitching motility response regulator PilG Regulator
  LOY54_RS01965 (LOY54_01965) pilH 439664..440029 (+) 366 WP_045193983.1 twitching motility response regulator PilH -
  LOY54_RS01970 (LOY54_01970) - 440026..440580 (+) 555 WP_082075373.1 chemotaxis protein CheW -
  LOY54_RS01975 (LOY54_01975) - 440596..442641 (+) 2046 WP_045193845.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14919.27 Da        Isoelectric Point: 5.1866

>NTDB_id=627449 LOY54_RS01960 WP_258609012.1 439210..439620(+) (pilG) [Pseudomonas sp. B21-032]
MEQPGAALKVMVIDDSKTIRRTAQILLGEAGCEVITAIDGFDALTKIIDHQPQIIFVDVLMPRLDGYQTCALIKQNSIFK
DTPVILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIKAHVPGFAAEEQHAP

Nucleotide


Download         Length: 411 bp        

>NTDB_id=627449 LOY54_RS01960 WP_258609012.1 439210..439620(+) (pilG) [Pseudomonas sp. B21-032]
ATGGAACAGCCCGGCGCGGCATTGAAGGTGATGGTGATCGACGATTCCAAGACGATTCGCCGCACCGCCCAGATATTGCT
CGGTGAAGCAGGATGTGAGGTCATCACGGCCATCGACGGTTTCGATGCCCTGACCAAGATCATCGACCACCAGCCGCAGA
TCATTTTCGTCGACGTGCTGATGCCGCGTCTGGACGGCTACCAGACCTGCGCCCTGATCAAGCAGAACAGCATTTTCAAG
GACACGCCGGTGATTCTCCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCCCGTGGCCGTGTCGTCGGCTCTGATCAATT
TTTGACCAAACCTTTCAGCAAGGAAGAGCTGCTGGACGCAATCAAGGCCCATGTGCCCGGATTCGCCGCAGAAGAACAAC
ACGCACCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

68.8

91.912

0.632