Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EC110512_RS23245 Genome accession   NZ_AP019761
Coordinates   4544191..4545183 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli O111:H- strain 110512     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4539191..4550183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC110512_RS23220 (EC110512_C44300) rbsD 4539315..4539734 (+) 420 WP_000715936.1 D-ribose pyranase -
  EC110512_RS23225 (EC110512_C44310) rbsA 4539742..4541247 (+) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  EC110512_RS23230 (EC110512_C44320) rbsC 4541252..4542217 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  EC110512_RS23235 (EC110512_C44330) rbsB 4542242..4543132 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  EC110512_RS23240 (EC110512_C44340) rbsK 4543258..4544187 (+) 930 WP_001300603.1 ribokinase -
  EC110512_RS23245 (EC110512_C44350) cytR 4544191..4545183 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  EC110512_RS23250 (EC110512_C44360) mdtD 4545149..4546576 (-) 1428 WP_001280838.1 multidrug transporter subunit MdtD -
  EC110512_RS23255 (EC110512_C44370) yieP 4546599..4547291 (-) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=62744 EC110512_RS23245 WP_000224470.1 4544191..4545183(+) (cytR) [Escherichia coli O111:H- strain 110512]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=62744 EC110512_RS23245 WP_000224470.1 4544191..4545183(+) (cytR) [Escherichia coli O111:H- strain 110512]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGAGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment