Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LOY55_RS28665 Genome accession   NZ_CP087176
Coordinates   6254899..6255303 (-) Length   134 a.a.
NCBI ID   WP_027926573.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-040     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6249899..6260303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY55_RS28650 (LOY55_28610) - 6251737..6253794 (-) 2058 WP_258667176.1 methyl-accepting chemotaxis protein -
  LOY55_RS28655 (LOY55_28615) - 6253932..6254465 (-) 534 WP_109785623.1 chemotaxis protein CheW -
  LOY55_RS28660 (LOY55_28620) pilH 6254476..6254841 (-) 366 WP_008068134.1 twitching motility response regulator PilH -
  LOY55_RS28665 (LOY55_28625) pilG 6254899..6255303 (-) 405 WP_027926573.1 twitching motility response regulator PilG Regulator
  LOY55_RS28670 (LOY55_28630) gshB 6255527..6256480 (+) 954 WP_046029757.1 glutathione synthase -
  LOY55_RS28675 (LOY55_28635) - 6256558..6257457 (+) 900 WP_077431107.1 energy transducer TonB -
  LOY55_RS28680 (LOY55_28640) - 6257650..6258222 (+) 573 WP_046029751.1 YqgE/AlgH family protein -
  LOY55_RS28685 (LOY55_28645) ruvX 6258222..6258659 (+) 438 WP_003195067.1 Holliday junction resolvase RuvX -
  LOY55_RS28690 (LOY55_28650) pyrR 6258748..6259251 (+) 504 WP_046029746.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  LOY55_RS28695 (LOY55_28655) - 6259278..6260282 (+) 1005 WP_046029744.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14575.96 Da        Isoelectric Point: 7.2440

>NTDB_id=627367 LOY55_RS28665 WP_027926573.1 6254899..6255303(-) (pilG) [Pseudomonas sp. B21-040]
MDQHSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIQAHVPGFAAVLPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=627367 LOY55_RS28665 WP_027926573.1 6254899..6255303(-) (pilG) [Pseudomonas sp. B21-040]
ATGGATCAGCATTCCAGCGCCTTGAAGGTCATGGTGATCGACGATTCGAAGACGATTCGTCGCACCGCCGAAACGCTGTT
GAAGAATGTGGGTTGTGAAGTCATTACGGCCATCGACGGTTTCGATGCGCTGGCCAAGATTGCCGATAACCATCCCGGCA
TCATCTTTGTCGACATCATGATGCCGCGTCTGGATGGCTATCAGACCTGCGCTTTAATCAAGAACAATAGTGCGTTCAAG
TCCACGCCAGTGATTATGCTGTCGTCCAAGGACGGGCTGTTCGACAAGGCCAAGGGGCGCATCGTTGGCTCCGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAACGCGATCCAGGCCCATGTTCCGGGCTTCGCCGCCGTTTTGCCGC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

93.284

0.701