Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LOY55_RS26515 Genome accession   NZ_CP087176
Coordinates   5795255..5796622 (-) Length   455 a.a.
NCBI ID   WP_008028888.1    Uniprot ID   A0A2V2ALB9
Organism   Pseudomonas sp. B21-040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5790255..5801622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY55_RS26490 (LOY55_26450) - 5790586..5791152 (+) 567 WP_223522720.1 hypothetical protein -
  LOY55_RS26495 (LOY55_26455) yjiA 5791281..5792252 (-) 972 WP_109786311.1 GTPase -
  LOY55_RS26500 (LOY55_26460) - 5792415..5792612 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  LOY55_RS26505 (LOY55_26465) - 5792628..5794694 (-) 2067 WP_046028595.1 carbon starvation CstA family protein -
  LOY55_RS26510 (LOY55_26470) - 5794855..5795223 (+) 369 WP_046028598.1 PilZ domain-containing protein -
  LOY55_RS26515 (LOY55_26475) radA 5795255..5796622 (-) 1368 WP_008028888.1 DNA repair protein RadA Machinery gene
  LOY55_RS26520 (LOY55_26480) - 5796668..5797210 (-) 543 WP_109786312.1 ankyrin repeat domain-containing protein -
  LOY55_RS26525 (LOY55_26485) katB 5797270..5798811 (-) 1542 WP_223522718.1 catalase KatB -
  LOY55_RS26530 (LOY55_26490) mscL 5799097..5799510 (+) 414 WP_077431233.1 large-conductance mechanosensitive channel protein MscL -
  LOY55_RS26535 (LOY55_26495) - 5799640..5801058 (-) 1419 WP_223525272.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48748.20 Da        Isoelectric Point: 6.8987

>NTDB_id=627364 LOY55_RS26515 WP_008028888.1 5795255..5796622(-) (radA) [Pseudomonas sp. B21-040]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=627364 LOY55_RS26515 WP_008028888.1 5795255..5796622(-) (radA) [Pseudomonas sp. B21-040]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCTCAACCTTCCCCAAGTGGGCCGGCCAATGCGGCGAGTG
CGGGGCCTGGAACACGCTGACCGAAACCATGGTGGAAAGCGGTGGCGCCGCCGCCCCGAGCGGTCGCACTGGCTGGACCG
GTCAGCAGGCCCAGATCAAGACACTGGCCGAAGTCAGTGTCGAAGAAATACCGCGGTTTTCCACAGCCTCCAGTGAACTC
GATCGGGTGCTGGGCGGTGGCCTGGTCGACGGTTCGGTAGTGCTGATCGGCGGTGACCCTGGCATCGGTAAGTCGACCAT
CCTGTTGCAAACCTTGTGCAACCTCGCCAAAAGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCGCAGCAACAAGTGG
CCATGCGCGCCCGCCGGCTGGGTTTGCCGCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGGGTGGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCACC
GGGCGGTGTCTCGCAGGTTCGCGAGAGCGCAGCGCTGCTGGTGCGTTATGCCAAGCAAAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACCAAAGAAGGTGCGCTGGCCGGTCCGCGCGTGCTGGAGCACATGGTCGACACCGTTCTGTATTTCGAA
GGCGAATCCGATGGGCGTCTGCGTTTACTGCGGGCGGTGAAAAACCGTTTTGGCGCAGTTAACGAATTGGGTGTGTTCGG
CATGACCGACAAGGGCTTGAAAGAAGTCTCCAATCCCTCGGCGATTTTTCTCACCCGCGCTCAGGAAGAAGTTCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACACGACCGATGCTGGTGGAAGTCCAGGCCTTGGTGGACGACAGTCATTTGGCC
AACCCGCGCCGGGTAACACTGGGGCTGGATCAGAATCGCCTGGCGATGCTGCTCGCGGTTTTACACCGTCATGGCGGCAT
TCCGACCCACGATCAGGACGTATTCCTCAATGTGGTGGGCGGGGTGAAGGTGCTGGAAACAGCATCAGACCTGGCGTTGA
TGGCGGCCGTCATGTCCAGTTTGCGTAACCGGCCACTGCCGCATGATCTGTTGGTGTTTGGCGAAGTCGGCCTGTCGGGC
GAAGTGCGCCCGGTGCCAAGCGGTCAGGAACGCCTGAAAGAAGCCGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAAGAATCACCGCCGGGGTTGCAGATAATTGCAGTGACCCGTCTGGAACAGGCACTGGACGCGTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V2ALB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466
  radA Streptococcus pneumoniae Rx1

46.491

100

0.466
  radA Streptococcus pneumoniae D39

46.491

100

0.466
  radA Streptococcus pneumoniae R6

46.491

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.466