Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N1705_RS16695 Genome accession   NZ_CP104123
Coordinates   3469524..3470129 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain USDA-ARS-USMARC-49610     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3464524..3475129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1705_RS16675 (N1705_16675) aes 3464561..3465520 (+) 960 WP_016244318.1 acetyl esterase -
  N1705_RS16680 (N1705_16680) hemH 3465517..3466479 (-) 963 WP_001250088.1 ferrochelatase -
  N1705_RS16685 (N1705_16685) adk 3466715..3467359 (-) 645 WP_001220233.1 adenylate kinase -
  N1705_RS16690 (N1705_16690) htpG 3467540..3469414 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  N1705_RS16695 (N1705_16695) recR 3469524..3470129 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N1705_RS16700 (N1705_16700) ybaB 3470129..3470458 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N1705_RS16705 (N1705_16705) dnaX 3470511..3472442 (-) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  N1705_RS16710 (N1705_16710) apt 3472571..3473122 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N1705_RS16715 (N1705_16715) ybaN 3473275..3473652 (-) 378 WP_001188905.1 DUF454 family protein -
  N1705_RS16720 (N1705_16720) priC 3473722..3474249 (+) 528 WP_000626986.1 primosomal replication protein N'' -
  N1705_RS16725 (N1705_16725) rsmS 3474263..3474424 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=627352 N1705_RS16695 WP_001195025.1 3469524..3470129(-) (recR) [Escherichia coli strain USDA-ARS-USMARC-49610]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=627352 N1705_RS16695 WP_001195025.1 3469524..3470129(-) (recR) [Escherichia coli strain USDA-ARS-USMARC-49610]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443