Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   VIBNI_RS24645 Genome accession   NC_022543
Coordinates   1324557..1325654 (-) Length   365 a.a.
NCBI ID   WP_004408229.1    Uniprot ID   U4KIP8
Organism   Vibrio nigripulchritudo     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1319557..1330654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS24630 (VIBNI_B1293) - 1319644..1320903 (+) 1260 WP_022561555.1 hydroxymethylglutaryl-CoA reductase -
  VIBNI_RS24635 (VIBNI_B1294) - 1320978..1321625 (-) 648 WP_022561556.1 hypothetical protein -
  VIBNI_RS24640 (VIBNI_B1295) - 1321929..1324538 (-) 2610 WP_004408228.1 LuxQ periplasmic sensor domain-containing protein -
  VIBNI_RS24645 (VIBNI_B1296) luxP 1324557..1325654 (-) 1098 WP_004408229.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  VIBNI_RS24650 (VIBNI_B1297) - 1325820..1326452 (-) 633 WP_004408230.1 response regulator -
  VIBNI_RS24655 (VIBNI_B1298) narQ 1326439..1328157 (-) 1719 WP_022561557.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  VIBNI_RS29050 napF 1328358..1328849 (+) 492 WP_080761169.1 ferredoxin-type protein NapF -
  VIBNI_RS24660 (VIBNI_B1299) - 1328852..1329154 (+) 303 WP_022561558.1 chaperone NapD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41193.66 Da        Isoelectric Point: 7.4112

>NTDB_id=62734 VIBNI_RS24645 WP_004408229.1 1324557..1325654(-) (luxP) [Vibrio nigripulchritudo]
MKLRHLLVGTISLALTSSLNAAQVLNGYWEYSDFLKTFPEQQSLVRNFSDVVRSEPVPLKVKQRKPVTISVIYPGEQVSD
YWRRNIKAFSKRMDELGIEYKINKVFTRPNVDIRQQSASLMEAIRNKSGYLIFTLDTGRHRKFIEHVLNSPDTKLILQNI
TTPLKAWEQNQPFMYVGFDHATGSRALASHFKSRFPRGADYSVLFFSQGYISAARGDTFIDAMSSEGENYQLRSSFYTKA
SRESGYQAAKNAIQKGDNLAFMYACSTDVALGATDAIKELGRNDIIINGWGGGSAELEAIQKGELDVTIMRMNDDTGVAM
AEAIKMDLEDKTVPTVYSGDFEIVTSQDSEERIQELKLRAFRYSD

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=62734 VIBNI_RS24645 WP_004408229.1 1324557..1325654(-) (luxP) [Vibrio nigripulchritudo]
ATGAAATTGCGACATCTTTTGGTTGGCACCATCAGTTTGGCTTTAACGTCGAGCTTAAACGCAGCACAAGTTCTCAACGG
GTATTGGGAATACAGTGATTTCCTTAAAACCTTCCCAGAGCAGCAGTCACTGGTCAGAAACTTTAGTGATGTTGTTCGCT
CTGAGCCCGTCCCACTTAAGGTAAAACAGAGAAAACCTGTCACGATCTCGGTTATCTATCCGGGTGAGCAGGTGTCTGAT
TACTGGCGCAGAAACATCAAAGCATTCAGCAAAAGAATGGATGAACTGGGCATTGAGTATAAAATTAACAAAGTTTTTAC
TCGCCCGAATGTAGACATTCGTCAGCAAAGTGCTTCTTTGATGGAAGCCATCCGTAACAAGTCAGGCTATTTGATCTTCA
CCTTAGATACAGGTCGACACAGAAAATTCATCGAACACGTTCTCAATAGCCCAGATACCAAACTCATACTGCAAAACATC
ACCACACCGCTTAAAGCGTGGGAACAAAACCAACCCTTTATGTATGTTGGCTTTGACCATGCTACGGGAAGTCGCGCTCT
TGCCAGCCATTTTAAATCTCGTTTTCCGCGAGGCGCAGACTACTCAGTACTCTTCTTTTCTCAGGGCTACATCAGTGCTG
CACGTGGCGATACTTTCATCGATGCCATGAGTAGCGAAGGGGAAAACTACCAACTTCGTTCTTCTTTCTACACCAAGGCG
AGCCGAGAAAGTGGCTATCAGGCCGCAAAAAATGCGATTCAAAAAGGCGACAATTTAGCCTTCATGTATGCGTGTTCGAC
TGACGTGGCATTGGGTGCGACCGACGCGATTAAAGAACTTGGCAGAAATGACATAATTATCAACGGCTGGGGTGGTGGAA
GCGCTGAATTAGAAGCGATACAAAAAGGTGAATTGGATGTTACCATTATGAGAATGAACGATGATACAGGCGTTGCGATG
GCAGAGGCCATCAAAATGGATCTTGAAGACAAGACCGTACCTACCGTTTATTCCGGTGATTTTGAAATTGTCACCAGTCA
GGACAGTGAAGAAAGAATACAAGAGCTAAAATTACGTGCTTTCAGATATTCTGATTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U4KIP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.773

96.438

0.625

Multiple sequence alignment