NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	LOY43_RS24525	Genome accession	NZ_CP087175
Coordinates	5514812..5516179 (-)	Length	455 a.a.
NCBI ID	WP_007909773.1	Uniprot ID	J2YZH4
Organism	Pseudomonas sp. B21-041
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5509812..5521179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY43_RS24500 (LOY43_24465)	-	5509936..5510646 (+)	711	WP_095048716.1	GntR family transcriptional regulator	-
LOY43_RS24505 (LOY43_24470)	yjiA	5510745..5511716 (-)	972	WP_095048717.1	GTPase	-
LOY43_RS24510 (LOY43_24475)	-	5511876..5512073 (-)	198	WP_003228401.1	YbdD/YjiX family protein	-
LOY43_RS24515 (LOY43_24480)	-	5512089..5514155 (-)	2067	WP_038361749.1	carbon starvation CstA family protein	-
LOY43_RS24520 (LOY43_24485)	-	5514315..5514683 (+)	369	WP_220557021.1	PilZ domain-containing protein	-
LOY43_RS24525 (LOY43_24490)	radA	5514812..5516179 (-)	1368	WP_007909773.1	DNA repair protein RadA	Machinery gene
LOY43_RS24530 (LOY43_24495)	-	5516225..5516770 (-)	546	WP_258708843.1	ankyrin repeat domain-containing protein	-
LOY43_RS24535 (LOY43_24500)	katB	5516831..5518372 (-)	1542	WP_095048720.1	catalase KatB	-
LOY43_RS24540 (LOY43_24505)	mscL	5518658..5519071 (+)	414	WP_095048721.1	large-conductance mechanosensitive channel protein MscL	-
LOY43_RS24545 (LOY43_24510)	-	5519118..5519894 (-)	777	WP_095125464.1	ferredoxin--NADP reductase	-
LOY43_RS24550 (LOY43_24515)	-	5520219..5520932 (+)	714	WP_258708844.1	autoinducer binding domain-containing protein	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48773.25 Da Isoelectric Point: 6.8987

                                >NTDB_id=627336 LOY43_RS24525 WP_007909773.1 5514812..5516179(-) (radA) [Pseudomonas sp. B21-041]

MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA

TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=627336 LOY43_RS24525 WP_007909773.1 5514812..5516179(-) (radA) [Pseudomonas sp. B21-041]

ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCGGGCCAGTGCGGCGAGTG

CGGCGCCTGGAACACCCTGACCGAGACCATGATCGAAAGCGGCGGCGCCACAGCACCGACCGGCCGCACCGGCTGGGCCG

GGCAGCAGGCGCAGATCAAGACCTTGGCCGAAGTCAGCATCGAAGAAATTCCGCGCTTTTCCACCGCCTCCGGTGAGCTG

GACCGGGTCCTCGGTGGCGGTCTGGTCGACGGCTCGGTGGTGCTGATAGGCGGTGATCCGGGTATCGGTAAATCGACCAT

CCTGTTGCAGACCCTGTGCAACCTGGCCAAAAGCATGCCGGCTCTCTACGTCACCGGCGAAGAATCCCAACAGCAAGTGG

CCATGCGTGCCCGGCGCCTCGGCTTACCGCAGGATCAACTGCGGGTAATGACCGAAACCTGCATCGAAACCATCATCGCC

ACCGCCCGACAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACAATCTTCACCGAACAGCTGCAATCTGCCCC

CGGCGGTGTTTCCCAGGTACGTGAGAGCGCGGCGCTGCTGGTGCGTTATGCAAAACAGAGCGGCACGGCGATTTTCCTCG

TCGGCCACGTCACCAAGGAAGGCGCGCTCGCGGGTCCCCGAGTTCTCGAACACATGGTCGACACCGTGCTGTACTTCGAA

GGCGAGTCCGATGGGCGTTTGCGTTTGCTGCGTGCGGTGAAAAACCGTTTCGGTGCGGTCAACGAACTCGGTGTGTTCGG

CATGACCGACAAGGGGTTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACCCGTGCGCAGGAAGAAGTCCCCGGCA

GTGTGGTCATGGCCACGTGGGAAGGCACACGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGATGACAGCCATCTGGCC

AATCCGCGTCGGGTGACGCTGGGGCTGGATCAGAACCGTTTGGCGATGTTGCTCGCAGTTTTGCATCGCCATGGCGGGAT

TCCGACCCATGATCAGGACGTGTTCCTTAACGTGGTGGGTGGCGTGAAGGTGCTGGAAACGGCGTCTGATCTGGCGTTGA

TGGCGGCGGTGATGTCGAGTCTGCGCAACCGGCCATTGCCGCATGACCTGTTGGTGTTTGGTGAGGTCGGCCTGTCCGGC

GAAGTGCGCCCAGTGCCGAGCGGTCAAGAGCGGTTGAAGGAAGCGGCGAAGCATGGCTTCAAACGGGCGATCGTGCCGAA

GGGCAATGCGCCGAAGGAATCCCCACCAGGCTTGCAGATCATTGCCGTGACCCGCCTTGAACAGGCCCTTGACGCGCTCT

TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	J2YZH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.453	100	0.497
radA	Streptococcus mitis SK321	46.491	100	0.466
radA	Streptococcus mitis NCTC 12261	46.272	100	0.464
radA	Streptococcus pneumoniae Rx1	46.272	100	0.464
radA	Streptococcus pneumoniae D39	46.272	100	0.464
radA	Streptococcus pneumoniae R6	46.272	100	0.464
radA	Streptococcus pneumoniae TIGR4	46.272	100	0.464

Detailed information NTG0627336