Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VIBNI_RS24220 Genome accession   NC_022543
Coordinates   1232299..1233471 (+) Length   390 a.a.
NCBI ID   WP_004408985.1    Uniprot ID   A0AAV2VT62
Organism   Vibrio nigripulchritudo     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227299..1238471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS24200 (VIBNI_B1199) ylqF 1227516..1228451 (+) 936 WP_022561481.1 ribosome biogenesis GTPase YlqF -
  VIBNI_RS24205 (VIBNI_B1200) - 1228851..1229642 (+) 792 WP_004408980.1 EAL domain-containing protein -
  VIBNI_RS24210 (VIBNI_B1201) - 1229669..1230661 (-) 993 WP_022561482.1 GTP-binding protein -
  VIBNI_RS24215 (VIBNI_B1203) - 1231114..1232076 (+) 963 WP_004408983.1 TDT family transporter -
  VIBNI_RS24220 (VIBNI_B1204) cqsA 1232299..1233471 (+) 1173 WP_004408985.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VIBNI_RS24225 (VIBNI_B1205) - 1233645..1235387 (-) 1743 WP_158502641.1 hybrid sensor histidine kinase/response regulator -
  VIBNI_RS24230 (VIBNI_B1206) - 1236189..1236959 (-) 771 WP_022561484.1 helix-turn-helix transcriptional regulator -
  VIBNI_RS24235 (VIBNI_B1207) - 1237093..1238340 (+) 1248 WP_022561485.1 MFS transporter -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 43206.11 Da        Isoelectric Point: 6.1542

>NTDB_id=62733 VIBNI_RS24220 WP_004408985.1 1232299..1233471(+) (cqsA) [Vibrio nigripulchritudo]
MSNLTAKPLPNFIENKLENYLEKNIYSRNNGKHIVQGLLPNDDSIVLRSNDYLAICNHDYIKERQISALTHAKREPIMSA
VFQDQTIEEGSFEQKFADFLGFDHCIITQSGWAANVGLLQTIADENTHIYIDFFAHMSLWHGAQNANSKIHPFLHNRPKN
LLKQIKKYGPGIVVIDSVYSTHGTVAPLKEFVEVANEQGCAIIVDESHSIGTHGPHGAGLLAELGLTDKVDFVTTSLAKT
FSYRAGAILCHHKVHECLPFISLPAIFSSGIIPYEMEALKATLELIKGSDERREDLFNKSHRLIAGLKSLDISTDSDSQI
VAIETGTEENTEKVRDFFELNGIFGAVFCSPATPKNKSVIRLSVNSDVSDSELDKVLTVCSLAKEKGLLQ

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=62733 VIBNI_RS24220 WP_004408985.1 1232299..1233471(+) (cqsA) [Vibrio nigripulchritudo]
ATGAGTAACTTAACAGCTAAACCGCTGCCGAATTTTATTGAGAATAAACTTGAGAACTACCTCGAGAAGAACATTTACTC
ACGAAATAACGGCAAACACATCGTCCAGGGCTTGCTGCCAAACGATGATTCGATAGTACTTCGTAGTAACGACTACTTGG
CAATCTGTAATCACGATTACATTAAGGAGAGACAAATCAGTGCGCTTACCCATGCTAAGCGCGAGCCGATCATGTCGGCG
GTATTTCAGGACCAAACCATCGAAGAAGGTTCTTTCGAGCAGAAATTTGCTGATTTTCTAGGCTTTGACCACTGTATTAT
CACTCAGTCAGGCTGGGCGGCAAACGTAGGGCTTCTTCAGACCATTGCCGATGAAAACACTCACATTTACATCGATTTTT
TCGCTCATATGTCCTTGTGGCATGGTGCACAAAACGCAAACAGTAAGATCCACCCCTTCCTACACAATCGTCCTAAGAAC
TTACTGAAGCAGATAAAGAAATACGGACCCGGTATTGTGGTTATCGACTCGGTATACAGTACTCACGGAACGGTCGCACC
ATTGAAAGAATTTGTCGAAGTCGCAAATGAGCAAGGCTGCGCGATCATCGTCGACGAATCTCATTCTATTGGTACACACG
GACCCCACGGAGCTGGTTTGCTGGCTGAGCTAGGGTTAACGGATAAAGTTGATTTTGTTACCACCAGCCTGGCAAAAACG
TTTTCTTACCGAGCTGGCGCTATTTTGTGCCATCACAAAGTGCACGAATGTCTGCCCTTTATCTCACTTCCTGCCATCTT
CAGTTCGGGCATCATTCCTTACGAAATGGAGGCACTCAAAGCAACGCTGGAATTGATTAAGGGAAGCGACGAAAGACGCG
AGGATTTATTCAATAAATCTCATAGACTGATTGCCGGTTTGAAGTCTTTAGATATTAGTACAGACAGCGACTCTCAGATT
GTTGCTATAGAAACGGGAACAGAGGAAAACACAGAAAAGGTCAGAGACTTTTTCGAACTTAATGGCATTTTCGGTGCGGT
TTTTTGTAGCCCGGCAACGCCAAAAAATAAGAGTGTTATTCGCCTGTCTGTAAATAGCGATGTCAGTGATTCTGAGTTAG
ACAAAGTGCTTACTGTGTGTAGCTTGGCGAAAGAAAAAGGACTCTTGCAATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

54.974

97.949

0.538

Multiple sequence alignment