Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY32_RS18130 Genome accession   NZ_CP087174
Coordinates   3928089..3928724 (-) Length   211 a.a.
NCBI ID   WP_010223209.1    Uniprot ID   A0AAP0SGS2
Organism   Pseudomonas donghuensis strain B21-042     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3923089..3933724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY32_RS18100 (LOY32_18070) murB 3924187..3925206 (-) 1020 WP_010223214.1 UDP-N-acetylmuramate dehydrogenase -
  LOY32_RS18105 (LOY32_18075) - 3925203..3925667 (-) 465 WP_010223213.1 low molecular weight protein-tyrosine-phosphatase -
  LOY32_RS18110 (LOY32_18080) kdsB 3925667..3926431 (-) 765 WP_036996492.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY32_RS18115 (LOY32_18085) - 3926428..3926613 (-) 186 WP_003247142.1 Trm112 family protein -
  LOY32_RS18120 (LOY32_18090) lpxK 3926651..3927661 (-) 1011 WP_010223211.1 tetraacyldisaccharide 4'-kinase -
  LOY32_RS18125 (LOY32_18095) - 3927661..3928092 (-) 432 WP_010223210.1 biopolymer transporter ExbD -
  LOY32_RS18130 (LOY32_18100) exbB 3928089..3928724 (-) 636 WP_010223209.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY32_RS18135 (LOY32_18105) comA 3928795..3931017 (-) 2223 WP_258693790.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY32_RS18140 (LOY32_18110) - 3931161..3931703 (+) 543 WP_010223207.1 DUF2062 domain-containing protein -
  LOY32_RS18145 (LOY32_18115) - 3931671..3932450 (-) 780 WP_010223206.1 ABC transporter permease -
  LOY32_RS18150 (LOY32_18120) - 3932447..3933379 (-) 933 WP_010223205.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22830.04 Da        Isoelectric Point: 6.8759

>NTDB_id=627308 LOY32_RS18130 WP_010223209.1 3928089..3928724(-) (exbB) [Pseudomonas donghuensis strain B21-042]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAGRVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627308 LOY32_RS18130 WP_010223209.1 3928089..3928724(-) (exbB) [Pseudomonas donghuensis strain B21-042]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGCCGGGTCACGCCACCGCATCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAACTCAAGGCCCTGCGTGCCGATTCGCCACTGGGCGAGATCCTCGCTGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAGGAATGCATCGAAGAGGCCGCCGGCCGGGTCATTCATGAGCTGGAGCGCTACAT
CAATGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GTGCCTTCATGGGCACCGGCATGACCACCAACGCGGCGGTGTTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853