Detailed information NTG0627291

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: N1709_RS22960
• Genome accession: NZ_CP104117
• Coordinates: 4716295..4717320 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain USDA-ARS-USMARC-50748
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4711295..4722320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N1709_RS22950 (N1709_22950)	rpmE	4713526..4713738 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
N1709_RS22955 (N1709_22955)	priA	4713941..4716139 (+)	2199	WP_001315935.1	primosomal protein N'	Machinery gene
N1709_RS22960 (N1709_22960)	cytR	4716295..4717320 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
N1709_RS22965 (N1709_22965)	ftsN	4717412..4718371 (+)	960	WP_000068834.1	cell division protein FtsN	-
N1709_RS22970 (N1709_22970)	hslV	4718464..4718994 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
N1709_RS22975 (N1709_22975)	hslU	4719004..4720335 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
N1709_RS22980 (N1709_22980)	menA	4720402..4721328 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
N1709_RS22985 (N1709_22985)	rraA	4721421..4721906 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
N1709_RS22990 (N1709_22990)	zapB	4721991..4722236 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=627291 N1709_RS22960 WP_000644904.1 4716295..4717320(+) (cytR) [Escherichia coli strain USDA-ARS-USMARC-50748]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=627291 N1709_RS22960 WP_000644904.1 4716295..4717320(+) (cytR) [Escherichia coli strain USDA-ARS-USMARC-50748]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628