Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   EC110512_RS17475 Genome accession   NZ_AP019761
Coordinates   3364640..3365632 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli O111:H- strain 110512     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3359640..3370632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC110512_RS17450 (EC110512_C33070) ygbN 3360301..3361665 (+) 1365 WP_000104439.1 GntP family transporter -
  EC110512_RS17455 (EC110512_C33080) - 3361704..3361940 (-) 237 WP_000562984.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  EC110512_RS17460 (EC110512_C33090) - 3361951..3363372 (-) 1422 WP_000863199.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  EC110512_RS17465 (EC110512_C33100) - 3363372..3363965 (-) 594 WP_000767718.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  EC110512_RS17470 (EC110512_C33110) - 3364112..3364519 (+) 408 WP_001208070.1 MarR family transcriptional regulator -
  EC110512_RS17475 (EC110512_C33120) rpoS 3364640..3365632 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  EC110512_RS17480 (EC110512_C33130) nlpD 3365695..3366789 (-) 1095 WP_306365709.1 murein hydrolase activator NlpD -
  EC110512_RS17485 (EC110512_C33140) pcm 3366974..3367600 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  EC110512_RS17490 (EC110512_C33150) surE 3367594..3368355 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  EC110512_RS17495 (EC110512_C33160) truD 3368336..3369385 (-) 1050 WP_112033840.1 tRNA pseudouridine(13) synthase TruD -
  EC110512_RS17500 (EC110512_C33170) ispF 3369382..3369861 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  EC110512_RS17505 (EC110512_C33180) ispD 3369861..3370571 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=62722 EC110512_RS17475 WP_000081550.1 3364640..3365632(-) (rpoS) [Escherichia coli O111:H- strain 110512]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=62722 EC110512_RS17475 WP_000081550.1 3364640..3365632(-) (rpoS) [Escherichia coli O111:H- strain 110512]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TATTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715

Multiple sequence alignment