Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY56_RS01870 Genome accession   NZ_CP087168
Coordinates   401438..402502 (+) Length   354 a.a.
NCBI ID   WP_258619254.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-048     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396438..407502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY56_RS01860 (LOY56_01860) - 397262..398530 (+) 1269 WP_258619252.1 malic enzyme-like NAD(P)-binding protein -
  LOY56_RS01865 (LOY56_01865) - 398775..401219 (-) 2445 WP_408980368.1 penicillin-binding protein 1A -
  LOY56_RS01870 (LOY56_01870) comM 401438..402502 (+) 1065 WP_258619254.1 pilus assembly protein PilM Machinery gene
  LOY56_RS01875 (LOY56_01875) - 402502..403065 (+) 564 WP_258619255.1 PilN domain-containing protein -
  LOY56_RS01880 (LOY56_01880) pilO 403062..403685 (+) 624 WP_258619258.1 type 4a pilus biogenesis protein PilO -
  LOY56_RS01885 (LOY56_01885) - 403682..404209 (+) 528 WP_258619259.1 pilus assembly protein PilP -
  LOY56_RS01890 (LOY56_01890) pilQ 404223..406298 (+) 2076 WP_258619260.1 type IV pilus secretin PilQ Machinery gene
  LOY56_RS01895 (LOY56_01895) aroK 406303..406821 (+) 519 WP_258619262.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38054.50 Da        Isoelectric Point: 4.6182

>NTDB_id=627142 LOY56_RS01870 WP_258619254.1 401438..402502(+) (comM) [Pseudomonas sp. B21-048]
MLGLFNKKASALLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPASAVVEKNIAELEGVGQALARVLLKAKTSLRNVAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGVSARNSERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQERLTVAVVDIGATMTTLSVLHNGQIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFYASGQYNSVDHILLAGGTASVPGLDRLIEQRLDTPTLVANP
FSDMTLSSKVNAGALAADAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=627142 LOY56_RS01870 WP_258619254.1 401438..402502(+) (comM) [Pseudomonas sp. B21-048]
GTGCTAGGACTCTTCAATAAAAAAGCCAGTGCGCTTCTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTACTGGAGCT
AAGTCGCCAGGGCGACCGCTATCGGGTCGAGGCCTATGCGGTCGAGCCGCTGCCCGCCAGTGCCGTGGTCGAGAAAAATA
TCGCCGAGCTCGAAGGCGTGGGGCAGGCCCTTGCGCGTGTGCTGCTCAAGGCCAAAACCAGCCTCAGGAACGTTGCTGTG
GCGGTGGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGATGCCGGTCTTTCCGACGACGAGATGGAAAACCAGCT
GAAGATCGAGGCCGATCAATACATCCCTTACCCACTGGACGAAGTGGCGATCGATTTCGAAGTGCAGGGCGTATCGGCGC
GCAACTCCGAGCGGGTCAATGTGCTGCTGGCGGCCTGTCGCAAAGAAAACGTCGAAGTTCGTGAAGCAGCTCTGGCCCTG
GCCGGATTGACCGCGCGAGTGGTGGATGTCGAAGCTTATGCTCTGGAGCGATCGTTCGGCCTGCTGGCAACCCAATTGGC
TGCTTCCCAGGAGCGTCTGACCGTGGCGGTTGTCGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCACAACGGGC
AGATCATCTACACACGCGAACAACTGTTCGGCGGCCGTCAACTGACGGAAGAGATCCAGCGTCGTTATGGCCTGACGGTC
GAGCAGGCGGGGTTGGCGAAGAAGCAGGGCGGTTTGCCGGACGATTACGTCAGCGAGGTGTTGCAGCCGTTTCGGGAGGC
GTTGGTGCAACAGGTGTCGCGTTCGCTGCAGTTTTTCTATGCCTCCGGTCAGTACAACTCGGTCGATCATATCCTCCTGG
CCGGCGGGACCGCTTCGGTTCCCGGGCTGGATCGATTGATCGAGCAACGACTGGATACGCCGACCCTGGTGGCCAATCCA
TTCTCCGACATGACCCTGAGCAGCAAGGTCAACGCCGGTGCCCTGGCGGCCGATGCCCCGGCACTGATGATCGCCTGCGG
GCTGGCTCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.65

100

0.557
  comM Acinetobacter baylyi ADP1

53.955

100

0.54
  pilM Legionella pneumophila strain ERS1305867

48.87

100

0.489