Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N1707_RS05635 Genome accession   NZ_CP104112
Coordinates   1160111..1160716 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain USDA-ARS-USMARC-51688     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1155111..1165716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1707_RS05605 (N1707_05605) rsmS 1155816..1155977 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  N1707_RS05610 (N1707_05610) priC 1155991..1156518 (-) 528 WP_000844876.1 primosomal replication protein N'' -
  N1707_RS05615 (N1707_05615) ybaN 1156588..1156965 (+) 378 WP_001188905.1 DUF454 family protein -
  N1707_RS05620 (N1707_05620) apt 1157118..1157669 (+) 552 WP_112032478.1 adenine phosphoribosyltransferase -
  N1707_RS05625 (N1707_05625) dnaX 1157798..1159729 (+) 1932 WP_000122010.1 DNA polymerase III subunit gamma/tau -
  N1707_RS05630 (N1707_05630) ybaB 1159782..1160111 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N1707_RS05635 (N1707_05635) recR 1160111..1160716 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N1707_RS05640 (N1707_05640) htpG 1160826..1162700 (+) 1875 WP_112032479.1 molecular chaperone HtpG -
  N1707_RS05645 (N1707_05645) adk 1162881..1163525 (+) 645 WP_001220233.1 adenylate kinase -
  N1707_RS05650 (N1707_05650) hemH 1163657..1164619 (+) 963 WP_001250088.1 ferrochelatase -
  N1707_RS05655 (N1707_05655) aes 1164616..1165575 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=627087 N1707_RS05635 WP_001195025.1 1160111..1160716(+) (recR) [Escherichia coli strain USDA-ARS-USMARC-51688]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=627087 N1707_RS05635 WP_001195025.1 1160111..1160716(+) (recR) [Escherichia coli strain USDA-ARS-USMARC-51688]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443