Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BN854_RS02115 Genome accession   NC_022538
Coordinates   438883..440664 (+) Length   593 a.a.
NCBI ID   WP_026656997.1    Uniprot ID   U4KP57
Organism   Alteracholeplasma palmae J233     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 433883..445664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN854_RS02090 (BN85404090) - 433952..434557 (+) 606 WP_026656970.1 thiamine diphosphokinase -
  BN854_RS02095 (BN85404100) rpmB 434578..434766 (-) 189 WP_026656977.1 50S ribosomal protein L28 -
  BN854_RS02100 (BN85404110) - 435096..436751 (+) 1656 WP_026656986.1 DAK2 domain-containing protein -
  BN854_RS02110 (BN85404120) rcrP 437100..438890 (+) 1791 WP_026656995.1 ABC transporter ATP-binding protein Regulator
  BN854_RS02115 (BN85404130) rcrQ 438883..440664 (+) 1782 WP_026656997.1 ABC transporter ATP-binding protein Regulator
  BN854_RS02120 (BN85404140) - 440778..441326 (+) 549 WP_026656998.1 DUF402 domain-containing protein -
  BN854_RS02125 (BN85404150) - 441323..442294 (+) 972 WP_026656999.1 aromatic acid exporter family protein -
  BN854_RS02135 (BN85404160) - 442508..443650 (+) 1143 WP_026657000.1 site-2 protease family protein -
  BN854_RS02140 (BN85404170) - 443640..444197 (+) 558 WP_026657001.1 DNA-3-methyladenine glycosylase I -
  BN854_RS02150 (BN85404180) - 444498..444695 (+) 198 WP_026657002.1 cold shock domain-containing protein -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 66496.57 Da        Isoelectric Point: 9.4654

>NTDB_id=62708 BN854_RS02115 WP_026656997.1 438883..440664(+) (rcrQ) [Alteracholeplasma palmae J233]
MTKNKETKLKKPSNKGFSKFIKILKPYTLPIVIALLLAVFSTIVVVLSPEFIKKITEILSTSIMTGTKTVDIEEITRIAI
MLGIAYLIGALFSYTQGMIMNLVTQKVAFKLRTEISGKINKLPFSYFDNVNYGDVLSRVTNDVDLIAQTLNQNIVPMISA
ILQIILVVVFMFINSWLLTLAAIFSTLIGFFLMGIIMARSQKYFKEQQKNMGELNGHIEEIYSGHQVVQAFNGQQTAKNK
FNKLNTDLKSSAFKSQFISGLMMPIMSFVGNFGYVVVTVLGAWLVFRGDLSLGVISAFMIYIRLFTNPLGQIAQAATNLQ
QTSAASARVFDFMDEKELEPERENTQIVSNVKGNVEFKNVKFGYDKEKTIINNFSAKIKSGQKVAIVGPTGAGKTTLVNL
LMRFYEIDSGEITIDGISIKDMTRKTVHSLFAMVLQDTWIFDGTIRDNIVFNHKNVSYEDLKAVSKAASIHHYIKTLPKG
YDTIMDETTSLSSGQRQLITIARAMLLDAPMLILDEATSNVDTRTEIAIQRAMDKLMEKRTSFVIAHRLSTIKNADLILV
MNQGDIVESGTHEQLIEQKGFYEELYNSQFEEN

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=62708 BN854_RS02115 WP_026656997.1 438883..440664(+) (rcrQ) [Alteracholeplasma palmae J233]
ATGACTAAGAACAAAGAAACTAAGCTTAAAAAACCTTCAAATAAGGGATTTTCTAAATTTATAAAAATTCTTAAACCTTA
CACTTTACCGATTGTGATTGCACTATTACTAGCAGTATTTAGTACGATTGTTGTAGTGTTAAGTCCTGAATTTATTAAAA
AAATAACAGAAATCTTATCAACATCAATTATGACAGGCACAAAAACAGTTGATATTGAAGAAATTACAAGAATTGCAATT
ATGCTAGGTATAGCTTATTTAATTGGAGCACTATTTTCATATACACAAGGAATGATCATGAATTTAGTCACACAAAAAGT
AGCATTTAAACTTAGAACTGAAATATCAGGAAAAATTAATAAACTTCCTTTTAGTTACTTTGATAATGTCAATTATGGAG
ATGTATTAAGTAGAGTAACAAATGATGTTGACTTAATTGCACAAACATTAAATCAAAATATCGTTCCTATGATTTCTGCA
ATCTTACAAATTATTTTAGTAGTAGTATTCATGTTTATTAATAGCTGGTTACTAACGTTAGCCGCAATATTTTCAACATT
AATTGGATTTTTCTTAATGGGGATTATTATGGCACGCTCACAAAAGTATTTTAAAGAACAACAAAAAAATATGGGTGAAC
TAAATGGACATATAGAAGAAATCTATAGTGGTCACCAAGTAGTTCAAGCTTTTAACGGACAACAAACTGCTAAAAATAAA
TTTAATAAATTAAATACAGACTTGAAATCAAGTGCATTCAAATCACAATTTATATCAGGGCTTATGATGCCCATCATGTC
ATTTGTAGGTAATTTCGGGTATGTTGTTGTAACAGTGCTTGGAGCTTGGCTTGTTTTTAGAGGAGACCTTAGTTTAGGCG
TTATTTCGGCATTTATGATCTATATTAGATTATTTACTAACCCACTAGGTCAAATTGCTCAAGCAGCAACTAACCTCCAA
CAAACATCAGCAGCATCCGCTAGAGTTTTTGATTTTATGGATGAAAAAGAATTAGAACCTGAAAGAGAAAACACTCAAAT
TGTTTCTAATGTTAAAGGAAACGTTGAATTTAAAAATGTTAAATTTGGATATGATAAAGAAAAAACAATTATTAATAATT
TCTCTGCTAAAATTAAATCAGGACAAAAAGTTGCTATCGTAGGACCTACAGGTGCAGGTAAAACAACGCTTGTTAACTTG
TTGATGAGATTCTATGAAATAGATTCTGGAGAAATTACAATTGATGGTATCTCAATAAAAGATATGACAAGAAAAACAGT
ACATAGTTTATTTGCGATGGTTTTACAAGACACATGGATTTTTGATGGAACTATTAGAGATAATATTGTCTTTAATCATA
AAAATGTTAGTTATGAAGATTTGAAAGCTGTTAGTAAAGCAGCAAGTATTCACCATTATATTAAAACACTGCCAAAAGGT
TATGACACAATAATGGATGAAACAACTTCTCTATCATCAGGGCAAAGACAACTTATTACAATTGCTCGTGCAATGCTTCT
TGATGCACCGATGCTTATTTTAGATGAGGCAACATCTAATGTAGATACTAGAACTGAAATTGCTATCCAAAGAGCAATGG
ATAAACTAATGGAAAAAAGAACAAGTTTTGTCATTGCACATAGATTATCAACAATTAAGAATGCTGATTTAATTCTTGTA
ATGAACCAAGGTGATATAGTTGAAAGTGGAACACACGAACAACTGATTGAACAAAAAGGATTTTACGAAGAACTTTACAA
TAGTCAATTTGAAGAAAATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(32-309)

ABC transporter (ABC_tran)

(372-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U4KP57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.951

97.133

0.514

Multiple sequence alignment