Detailed information NTG0627071

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: N1707_RS00980
• Genome accession: NZ_CP104112
• Coordinates: 198442..199467 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain USDA-ARS-USMARC-51688
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 193442..204467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N1707_RS00950 (N1707_00950)	zapB	193526..193771 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
N1707_RS00955 (N1707_00955)	rraA	193856..194341 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
N1707_RS00960 (N1707_00960)	menA	194434..195360 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
N1707_RS00965 (N1707_00965)	hslU	195427..196758 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
N1707_RS00970 (N1707_00970)	hslV	196768..197298 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
N1707_RS00975 (N1707_00975)	ftsN	197391..198350 (-)	960	WP_000068828.1	cell division protein FtsN	-
N1707_RS00980 (N1707_00980)	cytR	198442..199467 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
N1707_RS00985 (N1707_00985)	priA	199623..201821 (-)	2199	WP_001300388.1	primosomal protein N'	Machinery gene
N1707_RS00990 (N1707_00990)	rpmE	202024..202236 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
N1707_RS00995 (N1707_00995)	-	202291..202914 (-)	624	WP_000720774.1	TIGR02117 family protein	-
N1707_RS01000 (N1707_01000)	yiiX	202921..203529 (-)	609	WP_000797341.1	YiiX family permuted papain-like enzyme	-
N1707_RS01005 (N1707_01005)	metJ	203713..204030 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=627071 N1707_RS00980 WP_000644904.1 198442..199467(-) (cytR) [Escherichia coli strain USDA-ARS-USMARC-51688]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=627071 N1707_RS00980 WP_000644904.1 198442..199467(-) (cytR) [Escherichia coli strain USDA-ARS-USMARC-51688]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628