Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LMH93_RS25035 Genome accession   NZ_CP087160
Coordinates   5553759..5554160 (-) Length   133 a.a.
NCBI ID   WP_003249324.1    Uniprot ID   A0AAD2W8A3
Organism   Pseudomonas sp. CIP-10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5548759..5559160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH93_RS25020 (LMH93_25020) - 5550723..5552747 (-) 2025 WP_223817433.1 methyl-accepting chemotaxis protein -
  LMH93_RS25025 (LMH93_25025) - 5552795..5553349 (-) 555 WP_003249330.1 chemotaxis protein CheW -
  LMH93_RS25030 (LMH93_25030) pilH 5553346..5553711 (-) 366 WP_014592657.1 twitching motility response regulator PilH -
  LMH93_RS25035 (LMH93_25035) pilG 5553759..5554160 (-) 402 WP_003249324.1 response regulator Regulator
  LMH93_RS25040 (LMH93_25040) gshB 5554398..5555351 (+) 954 WP_003249322.1 glutathione synthase -
  LMH93_RS25045 (LMH93_25045) - 5555443..5556348 (+) 906 WP_003249319.1 energy transducer TonB -
  LMH93_RS25050 (LMH93_25050) - 5556513..5557082 (+) 570 WP_003249318.1 YqgE/AlgH family protein -
  LMH93_RS25055 (LMH93_25055) ruvX 5557079..5557507 (+) 429 WP_164721830.1 Holliday junction resolvase RuvX -
  LMH93_RS25060 (LMH93_25060) pyrR 5557557..5558075 (+) 519 WP_003249313.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  LMH93_RS25065 (LMH93_25065) - 5558088..5559092 (+) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14632.88 Da        Isoelectric Point: 6.4772

>NTDB_id=627041 LMH93_RS25035 WP_003249324.1 5553759..5554160(-) (pilG) [Pseudomonas sp. CIP-10]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFATPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=627041 LMH93_RS25035 WP_003249324.1 5553759..5554160(-) (pilG) [Pseudomonas sp. CIP-10]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTAATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGCATCATTTTTG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTTATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGGCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGATGCGATCCGCGCCCATGTGCCCGGGTTCGCCACACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632