Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LMH93_RS19750 Genome accession   NZ_CP087160
Coordinates   4372130..4372765 (-) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas sp. CIP-10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4367130..4377765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH93_RS19720 (LMH93_19720) murB 4368227..4369246 (-) 1020 WP_230064478.1 UDP-N-acetylmuramate dehydrogenase -
  LMH93_RS19725 (LMH93_19725) - 4369243..4369707 (-) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  LMH93_RS19730 (LMH93_19730) kdsB 4369707..4370471 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LMH93_RS19735 (LMH93_19735) - 4370468..4370653 (-) 186 WP_003247142.1 Trm112 family protein -
  LMH93_RS19740 (LMH93_19740) lpxK 4370698..4371699 (-) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  LMH93_RS19745 (LMH93_19745) - 4371699..4372133 (-) 435 WP_014859651.1 biopolymer transporter ExbD -
  LMH93_RS19750 (LMH93_19750) exbB 4372130..4372765 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LMH93_RS19755 (LMH93_19755) comA 4372921..4375137 (-) 2217 WP_230064479.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LMH93_RS19760 (LMH93_19760) - 4375280..4375786 (+) 507 Protein_3873 DUF2062 domain-containing protein -
  LMH93_RS19765 (LMH93_19765) - 4375796..4376575 (-) 780 WP_047604512.1 ABC transporter permease -
  LMH93_RS19770 (LMH93_19770) - 4376572..4377504 (-) 933 WP_003247127.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=627035 LMH93_RS19750 WP_003247132.1 4372130..4372765(-) (exbB) [Pseudomonas sp. CIP-10]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627035 LMH93_RS19750 WP_003247132.1 4372130..4372765(-) (exbB) [Pseudomonas sp. CIP-10]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCGCTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGTGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825