Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LN047_RS16995 Genome accession   NZ_CP087159
Coordinates   3692829..3694190 (-) Length   453 a.a.
NCBI ID   WP_056324216.1    Uniprot ID   -
Organism   Achromobacter sp. JD417     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3687829..3699190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN047_RS16970 (LN047_16950) - 3688242..3689243 (+) 1002 WP_062840791.1 tripartite tricarboxylate transporter substrate binding protein -
  LN047_RS16975 (LN047_16955) - 3689319..3690290 (+) 972 WP_373979660.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  LN047_RS16980 (LN047_16960) - 3690421..3691377 (+) 957 WP_217617508.1 2-hydroxyacid dehydrogenase -
  LN047_RS16985 (LN047_16965) - 3691539..3691757 (-) 219 WP_062840661.1 hypothetical protein -
  LN047_RS16990 (LN047_16970) - 3692021..3692800 (-) 780 WP_056324218.1 sulfite exporter TauE/SafE family protein -
  LN047_RS16995 (LN047_16975) radA 3692829..3694190 (-) 1362 WP_056324216.1 DNA repair protein RadA Machinery gene
  LN047_RS17000 (LN047_16980) - 3694609..3695295 (+) 687 WP_373979662.1 hypothetical protein -
  LN047_RS17005 (LN047_16985) hpaR 3695403..3695864 (+) 462 WP_056324211.1 homoprotocatechuate degradation operon regulator HpaR -
  LN047_RS17010 (LN047_16990) hpaI 3695902..3696702 (+) 801 WP_175155804.1 4-hydroxy-2-oxoheptanedioate aldolase -
  LN047_RS17015 (LN047_16995) - 3696774..3697934 (-) 1161 Protein_3357 PepSY-associated TM helix domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48161.22 Da        Isoelectric Point: 6.9552

>NTDB_id=627020 LN047_RS16995 WP_056324216.1 3692829..3694190(-) (radA) [Achromobacter sp. JD417]
MAKTRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETVESSAPAAAAHRYAPLASSSPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSETTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALEKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=627020 LN047_RS16995 WP_056324216.1 3692829..3694190(-) (radA) [Achromobacter sp. JD417]
ATGGCAAAAACCCGTACCGTTTATGTGTGCGCCGACTGTGGCGGCACCACCCCAAAGTGGCAGGGCAAATGCCCGCATTG
CAACGCCTGGAACACGCTTGAAGAAACGGTGGAGTCGTCCGCGCCCGCGGCCGCCGCGCACCGCTATGCGCCGCTGGCCT
CGTCCAGCCCGGTGCGCAGCCTGTCCGAAATCGAGGCCCGCGAAACGCCGCGCCAGCCCACCGGCCTGGACGAATTCGAT
CGCGTGCTCGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCT
CTTGCAGGCGCTGGCCTCGCTGTCCGAAACCACCAACGTGCTGTACGTGACGGGCGAAGAGTCCGCCGAACAGGTCGCGT
TGCGCGCGCGCCGGCTGGGTCTGCAAACCGGCAACGTCAACCTGCTGGCCGAAATCCGCCTCGAAGCCATCCAGGCCGCG
GTGTCGGAACAAAAGCCCACCGTCGCCGTCATCGACTCCATCCAGACGCTCTACAGCGGCGAACTCACGGCGGCGCCGGG
ATCGGTGTCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGGCTGGCCAAGCAGACGGGCATCGCCATCGTCATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAGCACATCGTGGATACCGTGCTGTATTTCGAGGGC
GACACGCATTCGTCGTTCCGCCTGGTGCGCGCCTTCAAGAACCGCTTTGGCGCCGTCAACGAACTTGGCGTGTTCGCCAT
GACCGACCGCGGCCTGCGCGGCGTGGCCAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGCAGGTCGCCGGTTCGT
GCGTCATGGCCACGCAGGAAGGCACGCGTCCGCTCCTCGTTGAAATCCAGGCGCTGGTCGACAGTTCCCACGCGCCCAAT
CCGCGCCGGCTGACGGTCGGCCTGGAAGGCAACCGTCTCGCCATGCTTCTGGCCGTGCTGCACCGGCACGCGGGCGTGTC
GACCTTCGACCAGGACGTCTTCGTCAATGCGGTCGGCGGCGTGCGCATCACCGAACCCGCGGCCGACTTGCCGGTGCTGC
TGGCCATCATGTCGTCGCTGCGCGACCGGCCGCTGCCGCGCGGGTTGATCGCATTCGGCGAGGTGGGCCTGGCCGGCGAG
ATCCGGCCCGCCCCGCGCGGCCAGGAACGCCTGCGCGAAGCCGCCAAACTCGGTTTCTCGGTGGCGCTCATTCCCAAGGC
CAACGCGCCGCGCCAGCCCATCGAGGGCCTGGAGATCTGGGCGGTCGATCGCCTGGACGCGGCACTGGAAAAGCTGCGTT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.219

100

0.506
  radA Streptococcus mitis SK321

46.476

100

0.466
  radA Streptococcus mitis NCTC 12261

46.137

100

0.461
  radA Streptococcus pneumoniae TIGR4

48.357

94.04

0.455
  radA Streptococcus pneumoniae R6

48.357

94.04

0.455
  radA Streptococcus pneumoniae Rx1

48.357

94.04

0.455
  radA Streptococcus pneumoniae D39

48.357

94.04

0.455