Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   N1207_RS09970 Genome accession   NZ_CP104097
Coordinates   1953976..1954593 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain GL-4     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1948976..1959593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1207_RS09940 (N1207_09940) yndJ 1949293..1950933 (+) 1641 WP_038827863.1 YndJ family protein -
  N1207_RS09945 (N1207_09945) - 1951023..1951337 (+) 315 WP_166668700.1 hypothetical protein -
  N1207_RS09950 (N1207_09950) pghL 1951561..1952319 (+) 759 WP_041850786.1 gamma-polyglutamate hydrolase PghL -
  N1207_RS09955 (N1207_09955) - 1952346..1952795 (-) 450 WP_015483284.1 YndM family protein -
  N1207_RS09960 (N1207_09960) fosM 1953004..1953438 (+) 435 WP_032725818.1 FosM family fosfomycin resistance protein -
  N1207_RS09965 (N1207_09965) - 1953347..1953605 (+) 259 Protein_1915 hypothetical protein -
  N1207_RS09970 (N1207_09970) dinR/lexA 1953976..1954593 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  N1207_RS09975 (N1207_09975) yneA 1954743..1955060 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  N1207_RS09980 (N1207_09980) dinL 1955079..1955732 (+) 654 WP_041850785.1 recombinase family protein -
  N1207_RS09985 (N1207_09985) ynzC 1955796..1956029 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  N1207_RS09990 (N1207_09990) recP/tkt 1956198..1958201 (+) 2004 WP_003231593.1 transketolase Machinery gene
  N1207_RS09995 (N1207_09995) sirA 1958354..1958800 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  N1207_RS10000 (N1207_10000) yneF 1958886..1959104 (+) 219 WP_003221221.1 YneF family protein -
  N1207_RS10005 (N1207_10005) ynzD 1959178..1959351 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=626985 N1207_RS09970 WP_003238209.1 1953976..1954593(-) (dinR/lexA) [Bacillus subtilis strain GL-4]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=626985 N1207_RS09970 WP_003238209.1 1953976..1954593(-) (dinR/lexA) [Bacillus subtilis strain GL-4]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCTGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACACACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1