Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   N1207_RS09490 Genome accession   NZ_CP104097
Coordinates   1809778..1810209 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain GL-4     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804778..1815209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1207_RS09470 (N1207_09470) spoVS 1805340..1805600 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  N1207_RS09475 (N1207_09475) tdh 1805865..1806908 (+) 1044 WP_015715902.1 L-threonine 3-dehydrogenase -
  N1207_RS09480 (N1207_09480) kbl 1806921..1808099 (+) 1179 WP_015715903.1 glycine C-acetyltransferase -
  N1207_RS09485 (N1207_09485) miaB 1808247..1809776 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  N1207_RS09490 (N1207_09490) ymcA 1809778..1810209 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  N1207_RS09495 (N1207_09495) cotE 1810471..1811016 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  N1207_RS09500 (N1207_09500) hexA 1811149..1813725 (+) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=626982 N1207_RS09490 WP_003231834.1 1809778..1810209(+) (ymcA) [Bacillus subtilis strain GL-4]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=626982 N1207_RS09490 WP_003231834.1 1809778..1810209(+) (ymcA) [Bacillus subtilis strain GL-4]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGTTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1