Detailed information NTG0626897

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LOK79_RS17585
• Genome accession: NZ_CP087137
• Coordinates: 3554018..3555163 (+)
• Length: 381 a.a.
• NCBI ID: WP_017418708.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain JIN4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3549018..3560163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOK79_RS17565 (LOK79_17565)	-	3549492..3550208 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
LOK79_RS17570 (LOK79_17570)	narK	3550306..3551496 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
LOK79_RS17575 (LOK79_17575)	argS	3551631..3553301 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
LOK79_RS17580 (LOK79_17580)	-	3553298..3553726 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
LOK79_RS17585 (LOK79_17585)	rapF	3554018..3555163 (+)	1146	WP_017418708.1	tetratricopeptide repeat protein	Regulator
LOK79_RS17590 (LOK79_17590)	-	3555147..3555266 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
LOK79_RS17595 (LOK79_17595)	speB	3555389..3556261 (-)	873	WP_058906421.1	agmatinase	-
LOK79_RS17600 (LOK79_17600)	speE	3556321..3557151 (-)	831	WP_003151052.1	spermidine synthase	-
LOK79_RS17605 (LOK79_17605)	-	3557351..3559423 (+)	2073	WP_058906422.1	transglycosylase domain-containing protein	-
LOK79_RS17610 (LOK79_17610)	-	3559447..3559878 (-)	432	WP_043867516.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45782.29 Da
• Isoelectric Point: 5.0722

>NTDB_id=626897 LOK79_RS17585 WP_017418708.1 3554018..3555163(+) (rapF) [Bacillus velezensis strain JIN4]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=626897 LOK79_RS17585 WP_017418708.1 3554018..3555163(+) (rapF) [Bacillus velezensis strain JIN4]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGCATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533