Detailed information NTG0626834

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LOK79_RS01965
• Genome accession: NZ_CP087137
• Coordinates: 385857..387005 (+)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain JIN4
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 380857..392005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOK79_RS01945 (LOK79_01945)	-	381254..381937 (-)	684	WP_015388709.1	ABC transporter ATP-binding protein	-
LOK79_RS01950 (LOK79_01950)	-	381952..383388 (-)	1437	WP_024084884.1	ABC transporter permease	-
LOK79_RS01955 (LOK79_01955)	-	383601..384284 (+)	684	WP_024084885.1	response regulator transcription factor	-
LOK79_RS01960 (LOK79_01960)	-	384271..385704 (+)	1434	WP_161625271.1	sensor histidine kinase	-
LOK79_RS01965 (LOK79_01965)	rapC	385857..387005 (+)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
LOK79_RS01970 (LOK79_01970)	phrC	386989..387108 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
LOK79_RS01975 (LOK79_01975)	-	387258..387368 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
LOK79_RS01980 (LOK79_01980)	-	387448..388812 (-)	1365	WP_014304341.1	aspartate kinase	-
LOK79_RS01985 (LOK79_01985)	ceuB	389227..390180 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
LOK79_RS01990 (LOK79_01990)	-	390170..391117 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
LOK79_RS01995 (LOK79_01995)	-	391111..391869 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=626834 LOK79_RS01965 WP_003156336.1 385857..387005(+) (rapC) [Bacillus velezensis strain JIN4]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=626834 LOK79_RS01965 WP_003156336.1 385857..387005(+) (rapC) [Bacillus velezensis strain JIN4]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCAGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568