Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LNP19_RS04800 Genome accession   NZ_CP087132
Coordinates   1081913..1083274 (-) Length   453 a.a.
NCBI ID   WP_230063670.1    Uniprot ID   -
Organism   Flavobacterium acetivorans strain F-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1076913..1088274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNP19_RS04780 (LNP19_04780) - 1077658..1078695 (+) 1038 WP_230063666.1 aldo/keto reductase -
  LNP19_RS04785 (LNP19_04785) - 1078767..1080728 (-) 1962 WP_230063667.1 biosynthetic peptidoglycan transglycosylase -
  LNP19_RS04790 (LNP19_04790) - 1080910..1081320 (-) 411 WP_230063668.1 hypothetical protein -
  LNP19_RS04795 (LNP19_04795) - 1081394..1081798 (-) 405 WP_230063669.1 hypothetical protein -
  LNP19_RS04800 (LNP19_04800) radA 1081913..1083274 (-) 1362 WP_230063670.1 DNA repair protein RadA Machinery gene
  LNP19_RS04805 (LNP19_04805) - 1083274..1083627 (-) 354 WP_230063671.1 hypothetical protein -
  LNP19_RS04810 (LNP19_04810) - 1083627..1084124 (-) 498 WP_230063672.1 alpha/beta hydrolase-fold protein -
  LNP19_RS04815 (LNP19_04815) panD 1084322..1084672 (-) 351 WP_072940070.1 aspartate 1-decarboxylase -
  LNP19_RS04820 (LNP19_04820) panC 1084687..1085565 (-) 879 WP_230063673.1 pantoate--beta-alanine ligase -
  LNP19_RS04825 (LNP19_04825) - 1085644..1086450 (+) 807 WP_230063674.1 glycogen/starch synthase -
  LNP19_RS04830 (LNP19_04830) - 1086472..1088109 (+) 1638 WP_230063675.1 DUF4270 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49849.29 Da        Isoelectric Point: 5.8284

>NTDB_id=626773 LNP19_RS04800 WP_230063670.1 1081913..1083274(-) (radA) [Flavobacterium acetivorans strain F-29]
MSKVKTSFFCQSCGTQYAKWQGQCNACKEWNTIAEEIIQKQEKVAWKSEASSKSTAPKPLKINEIDSTQEIRMDTTDTEL
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPTSDNCYILTETKTQNIFKQI
EAIEPEIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAEIGIYEMLGSGLREVSNPSEILISHKDEELSGTVIASTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVNKDFCFAGEVGLSGEI
RQVNRVDQRIQEAEKLGFSTIFVSKYNKIALKNPGIKIELVAKIEDVASMLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=626773 LNP19_RS04800 WP_230063670.1 1081913..1083274(-) (radA) [Flavobacterium acetivorans strain F-29]
ATGTCAAAAGTTAAAACCTCTTTTTTCTGTCAAAGCTGCGGAACTCAATATGCTAAATGGCAAGGACAATGCAATGCCTG
TAAAGAATGGAATACCATTGCCGAAGAAATCATACAAAAACAAGAGAAAGTAGCCTGGAAAAGCGAAGCTTCCTCGAAAA
GTACAGCTCCAAAACCATTAAAAATAAACGAAATCGATTCGACTCAGGAAATCCGAATGGACACCACTGACACCGAACTC
AATCGCGTGCTTGGGGGAGGAATTGTTCCCGGCTCTCTTACGCTTTTAGGAGGAGAACCCGGAATAGGAAAAAGTACGCT
TTTGCTACAAATTTCACTGAAATTACCCTATAAAACCTTATATGTTTCGGGTGAAGAAAGCCAGAAACAAATTAAAATGC
GAGCGGAAAGAATTACGCCAACAAGTGATAATTGCTACATTTTGACCGAAACCAAAACGCAAAACATCTTCAAACAAATT
GAAGCTATTGAACCTGAAATTGTCATTATTGATTCGATTCAAACCTTGCATACCGATTACATAGAATCAACCGCCGGGAG
TATTTCTCAAATCAGGGAAACCACAGCCGAGCTCATAAAATTTGCCAAAGAAACTAACATTCCCGTAATTCTTATTGGTC
ACATTACCAAAGACGGAAACATTGCCGGACCAAAAATTCTGGAACACATGGTCGATACGGTTTTGCAATTTGAAGGTGAT
CGAAATCATGTCTATCGCATTTTGCGTTCGCTCAAAAACCGTTTTGGTTCCACTGCCGAAATAGGAATTTATGAAATGCT
AGGAAGTGGCTTACGCGAAGTTTCGAATCCATCCGAAATATTAATTTCACACAAAGACGAGGAATTATCAGGAACAGTAA
TTGCCAGCACACTCGAAGGCATGCGCCCTTTGATGATAGAAATTCAATCACTAGTAAGTACCGCAGTTTACGGAACACCG
CAACGCAGCACCACAGGTTATAATGCCAAAAGACTCAATATGATTTTGGCTGTTCTGGAAAAGCGTGCCGGTTTTCGCTT
AGGAGCCAAGGATGTTTTCCTGAATGTAACGGGAGGTATTTCGGTGGACGATCCTGCGATAGATTTAGCTGTAGTAGCCG
CCATTTTATCATCTAACGAAGATATTCCTGTAAACAAAGATTTTTGCTTTGCCGGTGAAGTAGGACTTTCGGGAGAAATC
CGTCAGGTAAACCGCGTGGACCAACGCATTCAAGAAGCCGAAAAACTGGGTTTTTCGACCATTTTCGTATCCAAATACAA
CAAAATCGCTTTAAAAAACCCCGGAATTAAAATTGAATTAGTCGCCAAAATAGAAGATGTAGCGAGTATGCTTTTTGGAT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)

AAA domain (AAA_25)

(65-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

48.904

100

0.492
  radA Streptococcus mitis NCTC 12261

48.791

100

0.49
  radA Streptococcus pneumoniae Rx1

48.791

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.791

100

0.49
  radA Streptococcus pneumoniae D39

48.791

100

0.49
  radA Streptococcus pneumoniae R6

48.791

100

0.49
  radA Bacillus subtilis subsp. subtilis str. 168

47.921

100

0.483