Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LOX64_RS16245 Genome accession   NZ_CP087122
Coordinates   3289981..3290577 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain TH12852     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3284981..3295577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOX64_RS16230 (LOX64_16230) helD 3285189..3287243 (-) 2055 WP_004179218.1 DNA helicase IV -
  LOX64_RS16235 (LOX64_16235) - 3287368..3287814 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LOX64_RS16240 (LOX64_16240) yccS 3287832..3289967 (+) 2136 WP_100291986.1 YccS family putative transporter -
  LOX64_RS16245 (LOX64_16245) sxy/tfoX 3289981..3290577 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LOX64_RS16250 (LOX64_16250) sulA 3290926..3291435 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  LOX64_RS16255 (LOX64_16255) ompA 3291788..3292858 (+) 1071 WP_002898408.1 porin OmpA -
  LOX64_RS16260 (LOX64_16260) matP 3292990..3293442 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LOX64_RS16265 (LOX64_16265) - 3293628..3295385 (+) 1758 WP_016529118.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=626706 LOX64_RS16245 WP_004179217.1 3289981..3290577(-) (sxy/tfoX) [Klebsiella pneumoniae strain TH12852]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=626706 LOX64_RS16245 WP_004179217.1 3289981..3290577(-) (sxy/tfoX) [Klebsiella pneumoniae strain TH12852]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51