Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BAPNAU_RS12160 Genome accession   NC_022530
Coordinates   2550397..2550681 (-) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis NAU-B3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2545397..2555681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAPNAU_RS12140 (BAPNAU_2329) ade 2545504..2547237 (-) 1734 WP_022553404.1 adenine deaminase -
  BAPNAU_RS12145 (BAPNAU_2330) ktrC 2547386..2548051 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  BAPNAU_RS12150 (BAPNAU_2331) - 2548092..2548919 (-) 828 WP_014417635.1 gamma-glutamylcyclotransferase family protein -
  BAPNAU_RS12155 (BAPNAU_2333) - 2548921..2550224 (-) 1304 Protein_2393 ATP-binding protein -
  BAPNAU_RS12160 (BAPNAU_2334) abrB 2550397..2550681 (-) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BAPNAU_RS12170 (BAPNAU_2336) mreBH 2550952..2551959 (+) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  BAPNAU_RS21415 (BAPNAU_2337) - 2552031..2552165 (+) 135 WP_003154559.1 protein YkpC -
  BAPNAU_RS12175 (BAPNAU_2338) - 2552266..2553498 (+) 1233 WP_007409644.1 aminopeptidase -
  BAPNAU_RS12180 (BAPNAU_2339) - 2553529..2554437 (-) 909 WP_022553408.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=62666 BAPNAU_RS12160 WP_014417633.1 2550397..2550681(-) (abrB) [Bacillus velezensis NAU-B3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=62666 BAPNAU_RS12160 WP_014417633.1 2550397..2550681(-) (abrB) [Bacillus velezensis NAU-B3]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment