Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   N2A96_RS08030 Genome accession   NZ_CP104047
Coordinates   1582656..1583258 (+) Length   200 a.a.
NCBI ID   WP_003105133.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1577656..1588258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS08000 (N2A96_08000) - 1578076..1578213 (-) 138 WP_003107500.1 hypothetical protein -
  N2A96_RS08005 (N2A96_08005) - 1578484..1580004 (-) 1521 WP_003107501.1 cell division site-positioning protein MapZ family protein -
  N2A96_RS08010 (N2A96_08010) - 1580009..1581169 (-) 1161 WP_003104991.1 class I SAM-dependent RNA methyltransferase -
  N2A96_RS08020 (N2A96_08020) gpsB 1581617..1581940 (-) 324 WP_003107503.1 cell division regulator GpsB -
  N2A96_RS08025 (N2A96_08025) - 1582059..1582577 (-) 519 WP_003103895.1 SLOG family protein -
  N2A96_RS08030 (N2A96_08030) recU 1582656..1583258 (+) 603 WP_003105133.1 Holliday junction resolvase RecU Machinery gene
  N2A96_RS08035 (N2A96_08035) pbp1a 1583251..1585473 (+) 2223 WP_003107505.1 penicillin-binding protein PBP1A -
  N2A96_RS08040 (N2A96_08040) pepC 1585504..1586838 (-) 1335 WP_003107507.1 aminopeptidase C -
  N2A96_RS08045 (N2A96_08045) nadE 1586930..1587754 (-) 825 WP_003104587.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23127.69 Da        Isoelectric Point: 9.7509

>NTDB_id=626652 N2A96_RS08030 WP_003105133.1 1582656..1583258(+) (recU) [Streptococcus parauberis strain KSP10]
MVNYPHHLKRKNASPVQTKKKESKVDFANRGMSFEAAINATNDYYLSRHLAVIHKKPTPIQIVKVDYPHRSRAKIVEAYF
RQASTTDYSGVYKGYYIDFEAKETRQKTAMPMKNFHAHQIEHMASVLEQKGICFVLLHFSTLKETYYLPAEKLIAFYQID
KGNKSMPLDYIKKNSFPIIIGAFPQVPYLDIIEENFIGGD

Nucleotide


Download         Length: 603 bp        

>NTDB_id=626652 N2A96_RS08030 WP_003105133.1 1582656..1583258(+) (recU) [Streptococcus parauberis strain KSP10]
ATGGTTAACTACCCTCATCATCTTAAACGGAAAAATGCAAGCCCTGTTCAAACAAAGAAAAAAGAGTCAAAAGTTGATTT
TGCAAATCGTGGGATGTCATTTGAAGCAGCAATTAATGCCACAAATGATTATTACCTCTCTCGACATCTTGCTGTTATCC
ATAAAAAACCTACACCAATACAAATTGTCAAAGTTGACTATCCACATCGAAGTCGAGCCAAAATTGTCGAAGCTTATTTC
AGACAAGCTTCCACTACTGACTATTCCGGTGTATATAAAGGGTACTATATAGATTTCGAAGCCAAGGAAACACGGCAAAA
AACGGCCATGCCCATGAAGAATTTCCATGCACATCAGATAGAGCATATGGCTTCGGTTTTAGAACAAAAGGGAATTTGCT
TTGTCCTTTTACACTTTTCAACTCTAAAAGAAACATATTATCTTCCAGCTGAAAAATTGATAGCTTTTTATCAAATTGAT
AAGGGCAACAAGTCAATGCCACTTGATTATATCAAAAAAAACAGTTTCCCGATAATTATTGGAGCCTTTCCTCAGGTTCC
TTACTTAGATATTATAGAAGAAAATTTTATAGGCGGTGATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.223

98.5

0.475