Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BAPNAU_RS11295 Genome accession   NC_022530
Coordinates   2333360..2334259 (-) Length   299 a.a.
NCBI ID   WP_014417764.1    Uniprot ID   -
Organism   Bacillus velezensis NAU-B3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2328360..2339259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAPNAU_RS11280 (BAPNAU_2154) xerC 2328745..2329611 (-) 867 WP_050436825.1 tyrosine recombinase XerC -
  BAPNAU_RS11285 (BAPNAU_2155) trmFO 2329731..2331038 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BAPNAU_RS11290 (BAPNAU_2156) topA 2331103..2333178 (-) 2076 WP_014417765.1 type I DNA topoisomerase -
  BAPNAU_RS11295 (BAPNAU_2157) dprA 2333360..2334259 (-) 900 WP_014417764.1 DNA-processing protein DprA Machinery gene
  BAPNAU_RS11300 (BAPNAU_2158) sucD 2334324..2335226 (-) 903 WP_014417763.1 succinate--CoA ligase subunit alpha -
  BAPNAU_RS11305 (BAPNAU_2159) sucC 2335255..2336412 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  BAPNAU_RS11310 (BAPNAU_2160) - 2336587..2336868 (-) 282 WP_022553350.1 FlhB-like flagellar biosynthesis protein -
  BAPNAU_RS11315 (BAPNAU_2161) - 2336865..2338568 (-) 1704 WP_022553351.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32850.04 Da        Isoelectric Point: 8.4593

>NTDB_id=62665 BAPNAU_RS11295 WP_014417764.1 2333360..2334259(-) (dprA) [Bacillus velezensis NAU-B3]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKEPELDEVLSDYRRKGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=62665 BAPNAU_RS11295 WP_014417764.1 2333360..2334259(-) (dprA) [Bacillus velezensis NAU-B3]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGACCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGAACCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCATATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365

Multiple sequence alignment